Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0616
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117202-26|CAE18010.1|   98|Caenorhabditis elegans Hypothetical...    29   2.8  
AF002198-6|AAF99938.1|  295|Caenorhabditis elegans Serpentine re...    29   2.8  
AF078785-7|AAC27086.2|  295|Caenorhabditis elegans Serpentine re...    28   4.9  
U80024-6|AAW88410.1|  300|Caenorhabditis elegans Serpentine rece...    28   6.5  
Z83111-3|CAB05536.1|  361|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>AL117202-26|CAE18010.1|   98|Caenorhabditis elegans Hypothetical
           protein Y47D3A.32 protein.
          Length = 98

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 596 FLKCSNIILFYFSKIKTRKHGRHYWR*DVCEAA 498
           F+  + +IL+Y   IKT ++ RH+WR   CE A
Sbjct: 41  FILLAILILYY---IKTSRYYRHWWRGRQCEKA 70


>AF002198-6|AAF99938.1|  295|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 1 protein.
          Length = 295

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -2

Query: 373 NIYVYLLCSMRKLLL--ETRHVQC*SSLNCYYCYVSHARSLQFAMT*ARRQSSCTRYLFF 200
           N+ +YL C++    +  +   ++C S  NCY+ Y +  RS+ FA+  A      TR L F
Sbjct: 146 NLIIYLFCTLNISAIPRDCGVLRC-SLDNCYFNYWTTDRSVLFALNFAFSGLLSTRLLLF 204

Query: 199 H 197
           +
Sbjct: 205 N 205


>AF078785-7|AAC27086.2|  295|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 2 protein.
          Length = 295

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -2

Query: 373 NIYVYLLCSMRKLLL--ETRHVQC*SSLNCYYCYVSHARSLQFAMT*ARRQSSCTRYLFF 200
           N+ +YL C++    +  +   ++C S  NCY+ Y +  RS+ FA+  A      TR L F
Sbjct: 146 NLILYLFCTLNISAIPRDCGVLRC-SLDNCYFNYWTTDRSVLFALNFAFSGLLSTRLLLF 204

Query: 199 H 197
           +
Sbjct: 205 N 205


>U80024-6|AAW88410.1|  300|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 8 protein.
          Length = 300

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = -2

Query: 379 YRNIYVYLLCSMR--KLLLETRHVQC*SSLNCYYCYVSHARSLQFAMT*ARRQSSCTRYL 206
           + N+ +YL C++    +  +   ++C S  NC++ Y +  RS+ FA+  A      TR L
Sbjct: 144 FENLILYLFCTLNIPAIPRDCAVMRC-SIDNCFFNYWTTDRSVLFALNFAFSGLLSTRLL 202

Query: 205 FF 200
            F
Sbjct: 203 LF 204


>Z83111-3|CAB05536.1|  361|Caenorhabditis elegans Hypothetical
           protein F57G8.4 protein.
          Length = 361

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +3

Query: 333 SNLRIEHNKYTYMFLYYELFRNCFHDIF*SAIPNC*MSS 449
           SNL      Y Y+F   EL  NCFH IF  + P   +SS
Sbjct: 12  SNLVATVGAYEYIFATIELMINCFH-IFILSRPRMRISS 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,351,487
Number of Sequences: 27780
Number of extensions: 289578
Number of successful extensions: 557
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)