Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0616
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   4.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   5.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   5.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.8  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 37  LRLDQVLDTSFLMAAAFATKELTWFPSHAN 126
           LR    LD   L+A    + +  WFP HA+
Sbjct: 150 LRQSSALDGVTLLADNSVSIKDPWFPRHAS 179


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 304 SSLNCYYCYVSHARSLQFAMT*ARRQ 227
           S   CY  ++ HA +L  ++  +RRQ
Sbjct: 362 SGATCYALFLGHATNLIQSLDSSRRQ 387


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 304 SSLNCYYCYVSHARSLQFAMT*ARRQ 227
           S   CY  ++ HA +L  ++  +RRQ
Sbjct: 330 SGATCYALFLGHATNLIQSLDSSRRQ 355


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 274 IRNNSSNSNWTNIGHDVFPAV 336
           + NNS N N  +   D  PA+
Sbjct: 538 VNNNSGNGNTNSSARDSSPAI 558


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,055
Number of Sequences: 438
Number of extensions: 3591
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)