Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0614
         (579 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    22   3.3  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   5.7  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 481 YIFVLQWISSKETSRNKNKIWIK 549
           Y  V++W  +++ S   N +WIK
Sbjct: 178 YDAVIKWSPNEDYSCEYNLVWIK 200


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
 Frame = -3

Query: 223 FEKFFTTFFSRLYG----NTNFGQILRELRQS*LLQYKLFCSYRLYTPKSFYSSCINRKI 56
           F  F+  F  + Y     N    + L E  ++ L    + CS     PK  +    NR+ 
Sbjct: 32  FPNFYNDFEVQRYTWKCENQKCVKYLVEDEETSLATCNMLCSEPAIWPKPVHIKLTNRES 91

Query: 55  SIINRS 38
           SII+++
Sbjct: 92  SIIDKT 97


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,436
Number of Sequences: 336
Number of extensions: 2748
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14412858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)