Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0614
         (579 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0355 + 28657833-28660665,28660762-28661126                       29   3.5  
09_04_0366 + 16970063-16970254,16970697-16970720,16972440-16973591     28   6.2  
07_03_0794 + 21562995-21563004,21564151-21565799                       28   6.2  
01_06_0012 + 25575196-25575198,25575769-25575945,25576034-255760...    27   8.2  
01_06_0004 + 25507739-25508206,25509346-25509477,25509910-255100...    27   8.2  

>01_06_0355 + 28657833-28660665,28660762-28661126
          Length = 1065

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 22/67 (32%), Positives = 37/67 (55%)
 Frame = +2

Query: 359 NKKATTSVIEL*NRKDFGNIFKSLRELFIS*PKIHSEFVDLIYSCYSGSVPKKHQEIRIK 538
           N KATT  + L + +  GN+  SL ELF +       ++DL Y+ +SG++PK    +   
Sbjct: 603 NLKATT-FMNLSSNRFSGNLPASL-ELFST-----LTYLDLSYNSFSGTIPKSFANLSPL 655

Query: 539 SGLSVEF 559
           + L++ F
Sbjct: 656 TTLNLSF 662


>09_04_0366 + 16970063-16970254,16970697-16970720,16972440-16973591
          Length = 455

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -1

Query: 330 TSWPRGDFVAPPDLSQNSNFEHNFATQRKCTKQSFVSKSFLQPFFRVYTE 181
           T W  G  +APP L+      H+F T   CT     + + L+     Y E
Sbjct: 305 TGWKIGWAIAPPHLTWGVRQAHSFLTFATCTPMQAAAAAALRAPDSYYEE 354


>07_03_0794 + 21562995-21563004,21564151-21565799
          Length = 552

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 22/52 (42%), Positives = 26/52 (50%)
 Frame = +2

Query: 410 GNIFKSLRELFIS*PKIHSEFVDLIYSCYSGSVPKKHQEIRIKSGLSVEFVL 565
           G + KS+ E F    KI  EF  L  S Y+  V K+  EIR    LSV F L
Sbjct: 342 GKMLKSMSEEF----KIPLEFTPL--SVYATQVTKEMLEIRPGEALSVNFTL 387


>01_06_0012 +
           25575196-25575198,25575769-25575945,25576034-25576078,
           25576164-25576371,25576685-25576875,25577078-25577473
          Length = 339

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 429 RLLKMFPKSLRFYSSITEVVAFLFIVR*SVC 337
           R+ ++ P +LRFY S   VVA + IV  S C
Sbjct: 68  RMPQVKPTALRFYGSFNVVVAGITIVNSSQC 98


>01_06_0004 +
           25507739-25508206,25509346-25509477,25509910-25510086,
           25510175-25510219,25510305-25510512,25510766-25510825,
           25510826-25511016,25511219-25511614
          Length = 558

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 429 RLLKMFPKSLRFYSSITEVVAFLFIVR*SVC 337
           R+ ++ P +LRFY S   VVA + IV  S C
Sbjct: 267 RMPQVKPTALRFYGSFNVVVAGITIVNSSQC 297


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,600,994
Number of Sequences: 37544
Number of extensions: 241927
Number of successful extensions: 584
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)