Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0614
         (579 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2985| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.8  
SB_1402| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.3  
SB_46095| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)               28   6.3  
SB_17182| Best HMM Match : Phospholip_A2_1 (HMM E-Value=5.8e-13)       27   8.4  

>SB_2985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 301 GNKIASWPTSSETN*SPNDKQKSNDLS 381
           GN++A W T + TN S N+   SN+ S
Sbjct: 5   GNEVAFWGTQNSTNNSNNNDNSSNNNS 31


>SB_1402| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 417

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = +2

Query: 203 GCKKLFETKDCFVHFRCVAKLCSKLLFWLKSGGATKSPLGQLVRKQTDHRTINKKATTSV 382
           GC+ +F +KD     RC A   S  LF      + K       R+ T HR   K  T + 
Sbjct: 19  GCESVFVSKDVTRAIRCDALGTSVRLFITSCVVSDKQVTTTTKRRNTKHRINTKHRTVTC 78

Query: 383 I 385
           +
Sbjct: 79  V 79


>SB_46095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = +2

Query: 203 GCKKLFETKDCFVHFRCVAKLCSKLLFWLKSGGATKSPLGQLVRKQTDHRTINKKATTSV 382
           GC+ +F +KD     RC A   S  LF      + K       R+ T HR   K  T + 
Sbjct: 19  GCESVFVSKDVTRAIRCDALGTSVRLFITSCVVSDKQVTTTTKRRNTKHRINTKHRTVTC 78

Query: 383 I 385
           +
Sbjct: 79  V 79


>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
          Length = 1878

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/64 (20%), Positives = 30/64 (46%)
 Frame = +1

Query: 73   N*NKNFLEYKVDNYKKVCIVEVNFDAVRAEFDQNLCFRIDAKKRL*KTFRNKGLFCTFSL 252
            N  +N  + +VD Y++ C  +        + + N+C  +D +KR  K   N+  +   ++
Sbjct: 1398 NTKENNEDRRVDEYRRKCKSKPGTTKENLDVNANICKNLDKRKRSYKEAMNESAYLEGNV 1457

Query: 253  RSEI 264
            +  +
Sbjct: 1458 KERL 1461


>SB_17182| Best HMM Match : Phospholip_A2_1 (HMM E-Value=5.8e-13)
          Length = 182

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 263 LCSKLLFWLKSGGATKSP 316
           LC ++ FWLK+G  TK+P
Sbjct: 123 LCFRVRFWLKAGIRTKAP 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,762,143
Number of Sequences: 59808
Number of extensions: 329108
Number of successful extensions: 629
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)