Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0613
         (655 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    24   1.3  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    23   1.7  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   1.7  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    23   2.2  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   5.1  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   5.1  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   6.7  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 68  AIIIYNQSVRSMKLVKE 118
           AII+YN  VR +K V+E
Sbjct: 318 AIILYNPDVRGIKSVQE 334


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 205 FFKKFLKINVSYSLL 161
           FFK+FL + VSY L+
Sbjct: 169 FFKRFLPVYVSYLLI 183


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/49 (22%), Positives = 24/49 (48%)
 Frame = +3

Query: 399 CLLQYI*PVFYWKTNYFFVIFYFIIMTYLVPITQSVLSAYYFYKIMSMF 545
           C+  ++ P+F+    Y+F   + I   +L+     +L  Y+F+    +F
Sbjct: 132 CIYYFVVPLFFLLCIYYFYCAFIIFTVHLL----FLLCIYHFFCAFIIF 176



 Score = 21.8 bits (44), Expect = 5.1
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +3

Query: 345 SLH*ALIPIVYTP*CIQCCLLQYI*PVFYWKTNYFFVIFYFIIMTYLVPITQSVLSAYYF 524
           +LH   +P +Y        ++  I  +FY        I+YF     L  +   +L   Y+
Sbjct: 203 TLHLLFLPCIYY--FYSAFIIFTIHLLFYCVLIILLCIYYFYYAFILFTVHLLLLVCIYY 260

Query: 525 YKIMSMFHIC 554
           +  M +   C
Sbjct: 261 FYYMHLLFCC 270


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 422 CVLLENKLFFRNILFYHYDIFSSYHTI 502
           CV+  N++F  NILF H  IF+   T+
Sbjct: 147 CVIYFNRIFGWNILFGH--IFTVCRTL 171


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +3

Query: 444 YFFVIFYFIIMTYLVPITQSVLSAYYFYKIMSMFHICQAS 563
           Y+ ++++  IM YL      +L      K  + F IC  S
Sbjct: 329 YYNILYFCRIMVYLNSAINPILYNLMSSKFRTGFIICSES 368


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = -1

Query: 250  IGFTCGYRCFTSKKYFFKKFLKINVSYSLLC 158
            I F C  RCF   K      + +N  Y  LC
Sbjct: 1107 ITFGCSNRCFFPSKIRICWNVLLNCVYLFLC 1137


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 428 LLENKLFFRNILFYHYDIFSSY 493
           LL+    F+N+L  HY+ F  Y
Sbjct: 389 LLQVAQIFKNLLENHYEEFVRY 410


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,519
Number of Sequences: 336
Number of extensions: 3002
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)