Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0613
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    28   1.4  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    27   3.1  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   4.1  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    25   7.2  
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    25   9.5  
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54...    25   9.5  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    25   9.5  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 588 NKKNVSRHGTPGRCETSTLFCKSNMQKE 505
           +KK+V    +PG CETS+ F K+  +KE
Sbjct: 845 SKKDVET--SPGSCETSSAFAKTYAEKE 870


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +2

Query: 458 ILFYHYDIFSSYHTICS 508
           ILF HYDI   YHT  S
Sbjct: 175 ILFNHYDIVIEYHTTSS 191


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +2

Query: 443 LFFRNILFYHYDIFSSYHTICSFCILLLQNNVDVSHLPG 559
           +FFR+      D++  +  +C  C+ L Q    +  +PG
Sbjct: 122 IFFRDQFISRSDMWKLFRELCGKCVYLKQRVSFIGDVPG 160


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 533 YFVKVICRKNRL-CDRN*ICHNDKIKYYEKII 441
           +++ + CR+ ++ CD+N  CHN  +   E II
Sbjct: 23  HYLCLYCRRRKIKCDKNRPCHNCFVAKRECII 54


>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 2   FFVSDFFIFNYSFKSSFKVKQEAIIIYNQSVRS 100
           F  SD+  FN+   + F V    ++IY Q   S
Sbjct: 362 FSDSDYISFNFGSDADFHVSVNDLVIYRQESTS 394


>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
           Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = -3

Query: 563 GRLADVKHRHYFVKVICRKNRLCDRN*ICHNDK 465
           G  + V  + Y++K++ R +++C+   +  N+K
Sbjct: 476 GFKSSVDQKGYYLKILTRLSKICNSTILLRNEK 508


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 253 LRGRRMPWRRVAMRNRLCDSLPHDPALSHLSR 348
           L+ R    R +  RNRL + +PH   LS  SR
Sbjct: 354 LKARSKIVRLLQQRNRLVEQVPHSLILSVCSR 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,406,724
Number of Sequences: 5004
Number of extensions: 46935
Number of successful extensions: 126
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)