Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0613
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0044 + 7736858-7737079,7738015-7738026                           27   9.9  
02_03_0120 + 15463163-15465250                                         27   9.9  
01_06_1339 - 36413477-36413550,36413924-36413995,36414111-364141...    27   9.9  

>05_03_0044 + 7736858-7737079,7738015-7738026
          Length = 77

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/40 (40%), Positives = 17/40 (42%)
 Frame = -2

Query: 318 WERIAQSIAHGDASPRHASATQKSVLRAAIGVSHQKNIFL 199
           W RIA + AHG A   HAS       R   G     NI L
Sbjct: 11  WMRIASAAAHGLAYIHHASRRGSGTPRLVHGNIKSTNILL 50


>02_03_0120 + 15463163-15465250
          Length = 695

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 246 PISAWPTHAVATRRHAQSTVRFSPTRSGVKPSLS 347
           PI+AW  +  A RR     + +SP+R   KP+LS
Sbjct: 205 PITAWVEYR-APRRRLNVWLSYSPSRRPEKPALS 237


>01_06_1339 -
           36413477-36413550,36413924-36413995,36414111-36414199,
           36414293-36414379,36414865-36414943,36415043-36415083,
           36415787-36415944
          Length = 199

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/33 (36%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
 Frame = +3

Query: 423 VFYWKTNYFFVIFYFIIMTYL-VPITQSVLSAY 518
           ++Y++TNYF +I + + M +L  P+  S+L+A+
Sbjct: 51  LYYYRTNYFILIMFILGMGFLRKPV--SILAAF 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,990,151
Number of Sequences: 37544
Number of extensions: 254851
Number of successful extensions: 650
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)