Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0613
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56900| Best HMM Match : I-set (HMM E-Value=8e-10)                   30   1.9  
SB_31584| Best HMM Match : MreD (HMM E-Value=1.7)                      27   2.0  
SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_35372| Best HMM Match : SpoIIIAC (HMM E-Value=1.3)                  28   5.8  

>SB_56900| Best HMM Match : I-set (HMM E-Value=8e-10)
          Length = 968

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +3

Query: 246 PISAWPTHAVATRRHAQSTVRFSPTRSGVKPSLSLH*ALIPIVYTP*C 389
           P +  PTH V  R HAQ T+ ++P+      +   H A  P   TP C
Sbjct: 448 PSTPTPTHRVHPRLHAQYTLAYTPSTPTPTHAEYTH-AYTPSTQTPTC 494



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +3

Query: 246 PISAWPTHAVATRRHAQSTVRFSPTRSGVKPSLSLH*ALIPIVYTP*C 389
           P +  PTH V  R HAQ T+ ++P+      +   H A  P   TP C
Sbjct: 631 PSTPTPTHRVHPRLHAQYTLAYTPSTPTPTHAEYTH-AYTPSTQTPTC 677


>SB_31584| Best HMM Match : MreD (HMM E-Value=1.7)
          Length = 182

 Score = 26.6 bits (56), Expect(2) = 2.0
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = +3

Query: 420 PVFYWKTNYFFVIFYFIIMTYLV--PITQSVLSAY 518
           P+FYW     F+I YF  M Y    P  Q +L  Y
Sbjct: 137 PMFYWVIYPIFIIGYFYPMFYRYRGPKAQLILIGY 171



 Score = 21.8 bits (44), Expect(2) = 2.0
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +3

Query: 399 CLLQYI*PVFYW 434
           C + Y  P+FYW
Sbjct: 92  CFIGYFYPMFYW 103


>SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2070

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +3

Query: 444 YFFVIFYFIIMTYLVPITQSVLSAYY---FYKIMSMFHI 551
           Y  ++ Y +IM YLV +   V+  Y+    Y ++ ++H+
Sbjct: 15  YLMIMVYHVIMVYLVIMVYLVIMVYHVVMVYHVIMVYHV 53



 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +3

Query: 444 YFFVIFYFIIMTYLVPITQSVLSAYY---FYKIMSMFHI 551
           Y  ++ Y +IM YLV +   V+  Y+    Y ++ ++H+
Sbjct: 69  YHVIMVYHVIMVYLVIMVYHVIMVYHVIMVYHVIMVYHV 107



 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +3

Query: 444 YFFVIFYFIIMTYLVPITQSVLSAYY---FYKIMSMFHI 551
           Y  ++ Y +IM YLV +   V+  Y+    Y ++ ++H+
Sbjct: 129 YHVIMVYHVIMVYLVIMVYHVIMVYHVIMVYHVIMVYHV 167


>SB_35372| Best HMM Match : SpoIIIAC (HMM E-Value=1.3)
          Length = 378

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
 Frame = +3

Query: 264 THAVATRRHAQS---TVRFSPTRSGVKPSLSLH*ALIPIVYTP*CIQCCLLQYI*PVFYW 434
           TH V  R  A +   +V++  TR  V P L    +LI    TP  +   +L ++      
Sbjct: 275 THYVTYRPLATTIADSVKYLNTRHPVLPLLGQS-SLIRACATP--LTILVLYFVTAATRV 331

Query: 435 KTNYFFVIFYFIIMTYLVPITQSVLSA---YYFYKIMS 539
            T  F  +     + YLVP+  S LSA   Y FY+I++
Sbjct: 332 TTAIFGNVIILAFIIYLVPVLFSSLSAIFSYIFYRIVT 369


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,357,613
Number of Sequences: 59808
Number of extensions: 332616
Number of successful extensions: 791
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)