Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0613
         (655 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071578-1|AAL49200.1|   74|Drosophila melanogaster RE63496p pro...    29   5.5  
DQ162845-1|ABA42953.1| 1715|Drosophila melanogaster TRF2 protein.      29   7.3  

>AY071578-1|AAL49200.1|   74|Drosophila melanogaster RE63496p
           protein.
          Length = 74

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +1

Query: 496 HNLFFLHITFTK*CRCFTSARRPVTAHIFFILRRK 600
           H+LFFL  T+ K  RC  SA  P   H FF+ R++
Sbjct: 19  HSLFFLLSTYVKLGRCI-SAVCPANCH-FFVCRKR 51


>DQ162845-1|ABA42953.1| 1715|Drosophila melanogaster TRF2 protein.
          Length = 1715

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +3

Query: 78   FIIKAFVQ*NSLRNRQELRFSN*LTLRQSKEYDTFIFRNFLKKYFFDVK 224
            F+++   Q      RQ+ R      LRQ KE     +  FLK+Y  D K
Sbjct: 1002 FVLEKLRQQKEQHRRQQNRVKRERKLRQKKEKQRLEYERFLKEYREDCK 1050


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,396,098
Number of Sequences: 53049
Number of extensions: 455700
Number of successful extensions: 848
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2786177250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)