Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0613
         (655 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41470.1 68418.m05036 hypothetical protein similar to unknown...    31   0.67 
At4g31020.2 68417.m04406 expressed protein                             29   3.6  
At4g31020.1 68417.m04405 expressed protein                             29   3.6  
At1g74370.1 68414.m08616 zinc finger (C3HC4-type RING finger) fa...    27   8.2  
At1g73310.1 68414.m08484 serine carboxypeptidase S10 family prot...    27   8.2  

>At5g41470.1 68418.m05036 hypothetical protein similar to unknown
           protein (gb|AAF23339.1)
          Length = 158

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +2

Query: 11  SDFFIFNYSFKSSFKVKQEAIIIYNQSVRSM 103
           SD FI ++SF   F+ KQEA+  + + V+SM
Sbjct: 100 SDCFIDDFSFPKPFRGKQEAMEFFEELVKSM 130


>At4g31020.2 68417.m04406 expressed protein
          Length = 294

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 41  KSSFKVKQEAIIIYNQSVRSMKLVKESSRI 130
           +S + +KQE II+Y QSV S   +  +SR+
Sbjct: 131 RSDYGIKQEEIILYGQSVGSGPTLHMASRL 160


>At4g31020.1 68417.m04405 expressed protein
          Length = 294

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 41  KSSFKVKQEAIIIYNQSVRSMKLVKESSRI 130
           +S + +KQE II+Y QSV S   +  +SR+
Sbjct: 131 RSDYGIKQEEIILYGQSVGSGPTLHMASRL 160


>At1g74370.1 68414.m08616 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 261

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 494 HTICSFCILLLQNNVDVSHLPGVP*RLTFFL 586
           HTIC +C+L LQ  + V     +P +L FF+
Sbjct: 67  HTICKYCLLGLQRAI-VIKSSALPFQLPFFV 96


>At1g73310.1 68414.m08484 serine carboxypeptidase S10 family protein
           similar to serine carboxypeptidase I precursor
           (SP:P07519) [Hordeum vulgare]; glucose acyltransferase
           GB:AAD01263 [Solanum berthaultii]; contains Pfam
           profile: PF00450 Serine carboxypeptidase
          Length = 441

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -2

Query: 651 Y*YMHMLSGDCLKI*NEFSS*NKKNVSRHGTPGRCETSTLFCKS 520
           Y  +H    +CLK   EF+    +   RH     CET T  C S
Sbjct: 256 YVNVHPHDTECLKFVEEFNKLTNRVCERHILHSCCETETPSCYS 299


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,920,958
Number of Sequences: 28952
Number of extensions: 221993
Number of successful extensions: 466
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)