Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0612
         (660 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   9.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   9.0  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   9.0  

>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +3

Query: 417 LAAHPPFASWRNSEEARTDRPSQQLRSLNGDGK 515
           L+ HP   S  ++      +P  Q+R++ G  K
Sbjct: 256 LSLHPAETSMNDANRNDCAKPLTQIRNIRGPRK 288


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 590  EIGKIPYKSKE*TEIGLSVGPVW 658
            +IG I +KS+    +GL  G +W
Sbjct: 2141 DIGMIRHKSEFIKAMGLGGGMIW 2163


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 163 LFNSKDPICTKPRRKMTNGYKPQNPKR 243
           + N  D IC KPR+      + +N K+
Sbjct: 452 VLNPLDAICNKPRKDAVCVSQLRNAKK 478


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,140
Number of Sequences: 336
Number of extensions: 3016
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)