Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0612
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual             27   2.4  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    27   3.2  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   4.2  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   5.5  
SPAC323.08 |||ribonuclease MRP complex subunit |Schizosaccharomy...    25   7.3  

>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
          Length = 629

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +1

Query: 160 SLFNSKDPICTKPRRKMTNGYKPQNPKRASTE 255
           SL + K   CTK      NGY PQ     S E
Sbjct: 436 SLHHDKFDACTKGENTANNGYGPQTLNETSEE 467


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 429 PPFASWRNSEEARTDRPSQQLRSLN 503
           PP AS RN  E  +  PS+Q  S+N
Sbjct: 353 PPGASGRNRRERTSSTPSEQSTSVN 377


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
 Frame = +1

Query: 322 PIRPIVSRITIHWPSFYNVVTGKTLALPNLIALQ-----HIPLSPAGVIAKRPAPIALPN 486
           P  P+ S ++ H   +    +    +L N I+L      ++PLSP    A+ P+PI L +
Sbjct: 172 PRPPLPSSVSSHSSPYSTTSSTSLYSLYNDISLSCSPEPYLPLSPTRSPARTPSPIRLYS 231

Query: 487 S 489
           S
Sbjct: 232 S 232


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 558 VKSAHFLTNRPKSAKSLINQKNRP 629
           VK   FLTN   +  SL+ Q NRP
Sbjct: 675 VKDYDFLTNLNATTLSLLTQSNRP 698


>SPAC323.08 |||ribonuclease MRP complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 211

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = +1

Query: 133 NSFSKNF*LSLFNSKDPIC----TKPRRKMTNGYKPQNPKRASTERN 261
           NSF KN   SLF S  PI     TK + K +N    +  KRA   R+
Sbjct: 158 NSFLKNQDESLFLSSSPITVSQGTKRKSKNSNSTVKKKKKRARKGRD 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,514,510
Number of Sequences: 5004
Number of extensions: 47826
Number of successful extensions: 81
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)