Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0612
         (660 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK127421-1|BAC86972.1|  130|Homo sapiens protein ( Homo sapiens ...    31   2.8  
AY164485-1|AAO32798.1| 1732|Homo sapiens polycystic kidney disea...    31   3.6  
AB196633-1|BAE53435.1| 1857|Homo sapiens C8orfK23 protein protein.     31   4.8  

>AK127421-1|BAC86972.1|  130|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45513 fis, clone BRTHA2021450. ).
          Length = 130

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
 Frame = +2

Query: 389 KPWRYPT*S--PCSTSPFRQLA**RRGPHRSPFP-----TVAQPEWRWQ 514
           KP R PT    PC  S    ++   RGPHR P P      V+ P W W+
Sbjct: 45  KPERKPTMQDCPCDGSSRGSISKRLRGPHRGPGPQAKATPVSLPSWEWE 93


>AY164485-1|AAO32798.1| 1732|Homo sapiens polycystic kidney disease
           1-like 3 protein.
          Length = 1732

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 20/57 (35%), Positives = 25/57 (43%)
 Frame = -1

Query: 480 KGDRCGPLRYYASWRKGDVLQGD*VG*RQGFPSHDVVKRRPVNCNTTHYRANWVPGP 310
           KGD+C  L+YY   + GD L GD    R G  SH   + +         R    PGP
Sbjct: 125 KGDKC-LLKYYFICQTGDFLDGDAHYERNGNNSHLYQRHKKTKRGVAIARDKMPPGP 180


>AB196633-1|BAE53435.1| 1857|Homo sapiens C8orfK23 protein protein.
          Length = 1857

 Score = 30.7 bits (66), Expect = 4.8
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 343  RITIHWP-SFYNVVTGKTLALPNLIALQHIPLSPAGVIAKRPAPIALPN 486
            R+   WP S    +TGK  A  +L+  +    +P G   K P P+A PN
Sbjct: 1749 RVRGWWPFSKSKELTGKVEAEFHLVTAEEAEKNPVGKARKEPEPLAKPN 1797


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,810,235
Number of Sequences: 237096
Number of extensions: 1802298
Number of successful extensions: 6434
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6434
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7422585720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)