Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0611
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    31   0.19 
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    30   0.33 
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    30   0.33 
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    29   0.43 
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    29   0.57 
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    28   1.00 
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    28   1.3  
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    28   1.3  
SPAC12G12.02 ||SPAC630.01c|rRNA processing protein, unnamed|Schi...    27   1.7  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    26   4.0  
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei...    25   9.3  
SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2...    25   9.3  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    25   9.3  

>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 14/33 (42%), Positives = 25/33 (75%)
 Frame = -3

Query: 101 KKIEEAQRKLAEERLAMIEEQRKMDEERQKLKK 3
           KK++E + KL +ER+ + E+QR+ +E  QKL++
Sbjct: 122 KKMKELE-KLEKERIRLQEQQRRKEERDQKLRE 153


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -3

Query: 119  IMAENNKKIEEAQRKLAEERLAMIEEQRKMDEERQ 15
            I  E  ++IEE +R LA +R    E +R+ +EER+
Sbjct: 946  IPEEEMERIEEEERMLAAQRAKEEERERREEEERE 980


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 13/30 (43%), Positives = 22/30 (73%)
 Frame = -3

Query: 101 KKIEEAQRKLAEERLAMIEEQRKMDEERQK 12
           K+ EEA++K  E+RL   +E+++ + ERQK
Sbjct: 632 KRQEEARKKREEQRLKREQEKKQQELERQK 661



 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/34 (38%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = -3

Query: 101 KKIEEAQR-KLAEERLAMIEEQRKMDEERQKLKK 3
           K+ +EA R K+A E+    EE++++ EER++ +K
Sbjct: 677 KQQQEADREKMAREQRLREEEEKRILEERKRREK 710


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -3

Query: 110 ENNKKIEEAQRKLAEERLAMIEEQRKMDEERQKLKK 3
           E  KK    + K  +ER+ +IEEQ+  + E+++LK+
Sbjct: 135 ERRKKELMEKEKKEKERIRLIEEQKHKENEQRRLKQ 170


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
 Frame = -3

Query: 110 ENNKKIEEAQRKLAEE--RLAMIEEQRKMDEERQKLKK 3
           E  ++I E + ++AEE  RLA +EE RK +E R K K+
Sbjct: 262 EEEQRIREEEARIAEEEKRLAEVEEARK-EEARLKKKE 298



 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -3

Query: 113 AENNKKIEEAQR-KLAEERLAMIEEQRKMDEERQKLKK 3
           A+NN + E A   ++ E R+   +E+ +  +ER+KL+K
Sbjct: 158 AQNNNESEAAAPPEIPEVRVKTKKEKEREKKEREKLRK 195


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +2

Query: 506 PFLDLELRSLVLSACLEFLLRDVERSFDRLFFLE 607
           PF DLE+ +L+L +C  FLLR  E       FLE
Sbjct: 573 PF-DLEVLALLLESCGRFLLRYPETKLQMQSFLE 605


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
 Frame = -3

Query: 92  EEAQRKLAEERLAMIEEQ---RKMDEERQKLKK 3
           +E  R+LAEE   + E+Q   R++ EERQK+++
Sbjct: 880 KEKARRLAEEEALLKEKQERERQLQEERQKMQE 912


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -3

Query: 101 KKIEEAQRKLAEERLAMIEEQRKMDEERQKLKK 3
           KK+E+ Q+ + EE   M EE+R +D+E Q L +
Sbjct: 332 KKVEDEQKTVVEEIPEMDEEER-LDQELQDLSE 363


>SPAC12G12.02 ||SPAC630.01c|rRNA processing protein,
           unnamed|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = -3

Query: 110 ENNKKIEEAQRKLAEERLAMIEEQRK---MDEERQK 12
           E  KK+   +RK AE R+  +E+  K   MD+E++K
Sbjct: 61  ERYKKVRFFERKKAERRIKQLEKSLKDETMDDEKRK 96


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 569 DVERSFDRLFFLEGGPGTQ 625
           DV + +  LFF  GGPG+Q
Sbjct: 550 DVNKKYPVLFFAYGGPGSQ 568


>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
           Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 122 DIMAENNKKIEEAQRKLAEERLAMIEEQRKMDEERQKLKK 3
           + + E  + +E+    L  E   + E+ RK++EE   LKK
Sbjct: 101 ETLREKTQLLEKENGALKVENGYLYEKSRKLEEEMAHLKK 140


>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 304

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 110 ENNKKIEEAQRKLAEERLAMIEEQRK 33
           E NKK E  ++   E+RL +++EQ K
Sbjct: 153 EANKKRERQEKSDEEQRLRLLDEQIK 178


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 80  RKLAEERLAMIEEQRKMDEERQKLKK 3
           R+  EER  ++ EQR++D   QK+ +
Sbjct: 226 RRQEEERQRILREQRELDSLNQKVSQ 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,575,063
Number of Sequences: 5004
Number of extensions: 21853
Number of successful extensions: 106
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)