Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0611
(643 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0329 - 29308867-29308932,29309040-29309159,29309245-293093... 32 0.34
12_01_0079 + 644754-645932,645966-646061,646193-647122 31 1.0
11_01_0078 + 609005-610183,610217-610312,610444-611373 31 1.0
01_06_1575 + 38339970-38340786,38340884-38342001,38342099-38343055 31 1.0
01_06_0680 + 31132683-31133499,31133597-31134717,31134811-31135713 31 1.0
07_03_1436 - 26543846-26546806 30 1.8
07_01_0805 + 6295448-6296264,6296362-6297479,6297565-6298467 30 1.8
06_03_1180 + 28218386-28218649,28218725-28219202,28219309-282196... 30 1.8
02_05_0740 - 31404004-31404180,31404365-31405261,31405351-314059... 30 1.8
02_01_0348 - 2506007-2506909,2507003-2508120,2508230-2508883,250... 30 1.8
12_02_0035 - 12563503-12564405,12564494-12565611,12565709-125662... 29 3.1
11_06_0017 - 19288171-19288437,19288770-19288989,19291630-19291754 29 4.1
05_04_0068 + 17635693-17637204 28 7.2
03_05_0024 - 19934529-19935298,19935359-19935871,19936147-199366... 28 7.2
02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376... 28 7.2
01_06_0847 + 32411521-32411619,32411737-32411851,32412292-324123... 28 7.2
10_04_0022 + 7687383-7687670,7688479-7688556,7689456-7689535,768... 27 9.6
07_01_0800 - 6276423-6276833 27 9.6
02_02_0677 + 12859101-12859413,12862450-12862817 27 9.6
01_06_1656 + 38946922-38947542,38947640-38947739,38948045-389481... 27 9.6
>05_07_0329 -
29308867-29308932,29309040-29309159,29309245-29309364,
29309566-29310123,29310199-29310258,29310839-29310904,
29310993-29311103,29311167-29311257,29311349-29311449,
29311534-29311641,29311737-29314205
Length = 1289
Score = 32.3 bits (70), Expect = 0.34
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = -3
Query: 113 AENNKKIEEAQR--KLAEERLAMIEEQRKMDEERQKLKK 3
AE KK EE +R K EERL EE+RK +E +++ K+
Sbjct: 438 AEERKKREEEERLRKEEEERLKKEEEERKAEEAKRRKKE 476
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -3
Query: 86 AQRKLAEERLAMIEEQRKMDEERQKLKK 3
A+R+ AEER EE+R EE ++LKK
Sbjct: 433 ARRQEAEERKKREEEERLRKEEEERLKK 460
>12_01_0079 + 644754-645932,645966-646061,646193-647122
Length = 734
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/29 (41%), Positives = 23/29 (79%)
Frame = -3
Query: 98 KIEEAQRKLAEERLAMIEEQRKMDEERQK 12
++E+A+RK E+RLA +E++ +EER++
Sbjct: 210 RVEKAKRKAEEKRLARLEKEMLEEEERKQ 238
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/31 (32%), Positives = 22/31 (70%)
Frame = -3
Query: 95 IEEAQRKLAEERLAMIEEQRKMDEERQKLKK 3
+EE +RK EE ++EE+R++ +E+ + ++
Sbjct: 231 LEEEERKQREEMAKLVEERRRLRDEKAEAEE 261
>11_01_0078 + 609005-610183,610217-610312,610444-611373
Length = 734
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/29 (41%), Positives = 23/29 (79%)
Frame = -3
Query: 98 KIEEAQRKLAEERLAMIEEQRKMDEERQK 12
++E+A+RK E+RLA +E++ +EER++
Sbjct: 210 RVEKAKRKAEEKRLARLEKEMLEEEERKQ 238
Score = 28.3 bits (60), Expect = 5.5
Identities = 10/31 (32%), Positives = 22/31 (70%)
Frame = -3
Query: 95 IEEAQRKLAEERLAMIEEQRKMDEERQKLKK 3
+EE +RK EE ++EE+R++ +E+ + ++
Sbjct: 231 LEEEERKQREEMAKLVEERRRLRDEKAEAEE 261
>01_06_1575 + 38339970-38340786,38340884-38342001,38342099-38343055
Length = 963
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = -3
Query: 122 DIMAENNKKIEEAQRKLAEERLAMIEEQRKMDEERQKL 9
D MA+ K + RKL+ E+ + EE++ + EE++KL
Sbjct: 690 DRMADEKKITTDLMRKLSGEKKELSEEKKLLTEEKKKL 727
>01_06_0680 + 31132683-31133499,31133597-31134717,31134811-31135713
Length = 946
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = -3
Query: 122 DIMAENNKKIEEAQRKLAEERLAMIEEQRKMDEERQKL 9
D MA+ K + RKL+ E+ + EE++ + EE++KL
Sbjct: 691 DRMADEKKITTDLMRKLSGEKKELSEEKKLLTEEKKKL 728
>07_03_1436 - 26543846-26546806
Length = 986
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = -3
Query: 116 MAENNKKIEEAQRKLAEERLAMIEEQRKMDEERQKLKK 3
MA+N + + R+ +ER E+R+++EERQ+ ++
Sbjct: 198 MADNETEEQRQAREADQERTCQETERRRLEEERQRQER 235
>07_01_0805 + 6295448-6296264,6296362-6297479,6297565-6298467
Length = 945
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = -3
Query: 122 DIMAENNKKIEEAQRKLAEERLAMIEEQRKMDEERQKL 9
D MA+ K + RKL+ E+ + EE++ + EE++KL
Sbjct: 690 DRMADEKKITTDLVRKLSGEKKELSEEKKLLTEEKKKL 727
>06_03_1180 +
28218386-28218649,28218725-28219202,28219309-28219697,
28219785-28220426,28220466-28221368
Length = 891
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = -3
Query: 122 DIMAENNKKIEEAQRKLAEERLAMIEEQRKMDEERQKL 9
D MA+ K + RKL+ E+ + EE++ + EE++KL
Sbjct: 636 DRMADEKKITTDLVRKLSGEKKELSEEKKLLTEEKKKL 673
>02_05_0740 -
31404004-31404180,31404365-31405261,31405351-31405978,
31405997-31406468,31406575-31407052
Length = 883
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = -3
Query: 122 DIMAENNKKIEEAQRKLAEERLAMIEEQRKMDEERQKL 9
D MA+ K + RKL+ E+ + EE++ + EE++KL
Sbjct: 571 DRMADEKKITTDLVRKLSGEKKELSEEKKLLTEEKKKL 608
>02_01_0348 -
2506007-2506909,2507003-2508120,2508230-2508883,
2508920-2509046
Length = 933
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = -3
Query: 122 DIMAENNKKIEEAQRKLAEERLAMIEEQRKMDEERQKL 9
D MA+ K + RKL+ E+ + EE++ + EE++KL
Sbjct: 678 DRMADEKKITTDLVRKLSGEKKELSEEKKLLTEEKKKL 715
>12_02_0035 -
12563503-12564405,12564494-12565611,12565709-12566239,
12566337-12567153
Length = 1122
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = -3
Query: 122 DIMAENNKKIEEAQRKLAEERLAMIEEQRKMDEERQKL 9
D MA+ K + RKL+ ++ + EE++ + EE++KL
Sbjct: 867 DRMADEKKITTDLMRKLSGKKKELSEEKKLLTEEKKKL 904
>11_06_0017 - 19288171-19288437,19288770-19288989,19291630-19291754
Length = 203
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 119 IMAENNKKIEEAQRKLAEERLAMIEEQRKMDEERQKLKK 3
I E + EAQ K ER E ++K++EER+K ++
Sbjct: 100 IEKEKEAALVEAQHKAERERKEREELEKKLEEERKKAEE 138
>05_04_0068 + 17635693-17637204
Length = 503
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2
Query: 525 SSKSRKGHILYRRLAVAMHRTIIRTTEKNPKDVAKWM 415
SSKS Y +++ R + R +K+P+D+A+ M
Sbjct: 52 SSKSSSSRHRYAPYSISSSRRLARLEDKSPRDIARRM 88
>03_05_0024 -
19934529-19935298,19935359-19935871,19936147-19936635,
19936738-19937044,19937104-19937130
Length = 701
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -3
Query: 116 MAENNKKIEEAQRKLAEERLAMIEEQRKMDEERQ 15
MA+N + R++ E+R E+R+++EERQ
Sbjct: 70 MADNEIAEQRQPREVEEQRTRQEAERRRLEEERQ 103
>02_01_0521 +
3768072-3768239,3768280-3768337,3769197-3769659,
3769736-3769990,3770763-3770934,3772260-3772910,
3773659-3774045,3774123-3774155,3774239-3774307,
3774388-3774463,3775135-3775223,3775442-3775615,
3775693-3775821
Length = 907
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = -3
Query: 101 KKIEEAQRKLAEERLAMIEEQRKMDEERQK 12
K+IEE +R+ AE R + ++ R+ +EE ++
Sbjct: 427 KRIEEQRRREAERRRQLEKDMRRWEEEEEE 456
>01_06_0847 +
32411521-32411619,32411737-32411851,32412292-32412375,
32412430-32413478,32414690-32416371,32416477-32416586,
32417634-32418430,32418839-32418951,32419147-32419194,
32419425-32419652,32419732-32419829,32419967-32420019
Length = 1491
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 7/39 (17%)
Frame = -3
Query: 116 MAENNKKIEEAQRK-LAEER------LAMIEEQRKMDEE 21
+AE NK + E +RK L EE+ A +EEQ+K++E+
Sbjct: 273 LAEKNKNLIETERKKLTEEKSRAECLFAKLEEQKKLNED 311
>10_04_0022 +
7687383-7687670,7688479-7688556,7689456-7689535,
7689876-7690095,7690444-7690677
Length = 299
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = -3
Query: 119 IMAENNKKIEEAQRKLAEERLAMIEEQRKMDEER 18
++ EN +K+EEAQRK A E+ E +R ++ ER
Sbjct: 235 MLEENRRKVEEAQRKEALEQ-QQKELERFLELER 267
>07_01_0800 - 6276423-6276833
Length = 136
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +3
Query: 555 SFC-CVMLSGLLIGSFSSRGGPVPNSPYSE 641
SFC C LS +L+G + G P P E
Sbjct: 61 SFCRCPALSHMLVGMYKELGAPAKGQPMDE 90
>02_02_0677 + 12859101-12859413,12862450-12862817
Length = 226
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -3
Query: 122 DIMAENNKKIEEAQRKLAEERLAMIEEQRKMDEERQKLK 6
+ + ++NK +EEA+ +EE EE ++E+ +KLK
Sbjct: 132 EAVTKHNKMLEEAKHGRSEETKKYQEEIGALNEDMKKLK 170
>01_06_1656 +
38946922-38947542,38947640-38947739,38948045-38948189,
38948868-38948991,38949443-38949960,38950111-38950458,
38950557-38950638,38951309-38951707,38951790-38951927,
38952063-38952108,38952200-38952369
Length = 896
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = -3
Query: 110 ENNKKIEEA---QRKLAEERLAMIEEQRKMDEERQKLKK 3
+ K+ EEA Q++ +E M ++QRK +EE QK +K
Sbjct: 358 QQKKQQEEALREQKRREKEEAEMKKQQRKQEEEAQKEQK 396
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,890,547
Number of Sequences: 37544
Number of extensions: 147678
Number of successful extensions: 567
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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