Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0611
(643 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g10890.1 68414.m01251 F-box family protein contains Pfam PF00... 34 0.070
At5g26350.1 68418.m03150 hypothetical protein 33 0.12
At1g21160.1 68414.m02646 eukaryotic translation initiation facto... 33 0.21
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof... 31 0.86
At4g11740.1 68417.m01872 ara4-interacting protein, putative (SAY... 30 1.5
At4g21270.1 68417.m03074 kinesin-like protein A (KATA) 29 3.5
At2g06210.2 68415.m00683 phosphoprotein-related low similarity t... 29 3.5
At2g06210.1 68415.m00684 phosphoprotein-related low similarity t... 29 3.5
At1g65470.1 68414.m07427 chromatin assembly factor-1 (FASCIATA1)... 28 6.1
At2g30960.1 68415.m03776 expressed protein 27 8.0
>At1g10890.1 68414.m01251 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 592
Score = 34.3 bits (75), Expect = 0.070
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = -3
Query: 119 IMAENNKKIEEAQRKLAEERLAMIEEQRKMDEERQKLKK 3
I EN K++EEAQRK A ER EE+ + EE Q+ K+
Sbjct: 158 IAEENLKRVEEAQRKEAMERQRKEEERYRELEELQRQKE 196
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -3
Query: 110 ENNKKIEEAQRKLAEERLAMIEE-QRKMDEERQK 12
E ++ +E + ++AEE L +EE QRK ERQ+
Sbjct: 146 EREQQEKEERERIAEENLKRVEEAQRKEAMERQR 179
>At5g26350.1 68418.m03150 hypothetical protein
Length = 126
Score = 33.5 bits (73), Expect = 0.12
Identities = 12/35 (34%), Positives = 27/35 (77%)
Frame = -3
Query: 110 ENNKKIEEAQRKLAEERLAMIEEQRKMDEERQKLK 6
E K+EE ++KL +E+ + EE+++++EE+++L+
Sbjct: 55 EEKNKLEEEKKKLEKEKKQLEEEKKQLEEEKKQLE 89
Score = 31.1 bits (67), Expect = 0.65
Identities = 12/36 (33%), Positives = 28/36 (77%)
Frame = -3
Query: 110 ENNKKIEEAQRKLAEERLAMIEEQRKMDEERQKLKK 3
E+ KK +E + KL EE+ + +E+++++EE+++L++
Sbjct: 48 EDMKKHKEEKNKLEEEKKKLEKEKKQLEEEKKQLEE 83
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/32 (31%), Positives = 23/32 (71%)
Frame = -3
Query: 116 MAENNKKIEEAQRKLAEERLAMIEEQRKMDEE 21
+ E KK+E+ +++L EE+ + EE+++++ E
Sbjct: 60 LEEEKKKLEKEKKQLEEEKKQLEEEKKQLEFE 91
>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1088
Score = 32.7 bits (71), Expect = 0.21
Identities = 13/30 (43%), Positives = 23/30 (76%)
Frame = -3
Query: 101 KKIEEAQRKLAEERLAMIEEQRKMDEERQK 12
K+ E+ ++K EERL EE+R+++EER++
Sbjct: 233 KEAEDGKKKEEEERLRKEEEERRIEEERER 262
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = -3
Query: 113 AENNKKIEEAQR--KLAEERLAMIEEQRKMDEERQKLK 6
AE+ KK EE +R K EER E +R+ +E RQK K
Sbjct: 235 AEDGKKKEEEERLRKEEEERRIEEEREREAEEIRQKRK 272
>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
PF00190: Cupin
Length = 707
Score = 30.7 bits (66), Expect = 0.86
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -3
Query: 110 ENNKKIEEAQRKLAEERLAMIEEQRKMDEERQK 12
E K+ EE RK EER EE ++ +EER+K
Sbjct: 476 ERKKREEEEARKREEERKREEEEAKRREEERKK 508
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -3
Query: 101 KKIEEAQRKLAEERLAMIEEQRKMDEERQKLKK 3
K+ EE +RK EE EE+RK +EE K ++
Sbjct: 548 KRREEQERKRREEEARKREEERKREEEMAKRRE 580
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 101 KKIEEAQRKLAEERLAMIEEQRKMDEERQK 12
K+ E+ +RK EE EE+RK +EE K
Sbjct: 650 KEREDVERKRREEEAMRREEERKREEEAAK 679
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = -3
Query: 110 ENNKKIEEAQ--RKLAEERLAMIEEQRKMDEERQKLKK 3
E K+ EEA+ RK EER E +K +EERQ+ ++
Sbjct: 505 ERKKREEEAEQARKREEEREKEEEMAKKREEERQRKER 542
>At4g11740.1 68417.m01872 ara4-interacting protein, putative (SAY1)
similar to Ara4-interacting protein [Arabidopsis
thaliana] GI:13160609; contains Pfam profiles PF00789:
UBX domain, PF02809: Ubiquitin interaction motif
Length = 564
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = -3
Query: 116 MAENNKKIEEAQRKLAEERLAMIEEQRKMDEERQKLKK 3
+ E KK EEAQRKL EE+ E +R++D + L K
Sbjct: 444 LEEEKKKEEEAQRKLEEEQ----ELERQLDAKEASLPK 477
>At4g21270.1 68417.m03074 kinesin-like protein A (KATA)
Length = 793
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = -3
Query: 122 DIMAENNKKIEEAQRKLAEERLAMIEEQRKMDEERQKL 9
DI+ + +EE L +ERL M+E+Q + ERQK+
Sbjct: 342 DILTAKSGSLEETC-SLQKERLNMLEQQLAIANERQKM 378
>At2g06210.2 68415.m00683 phosphoprotein-related low similarity to
phosphoprotein from Mus musculus GI:1236239; contains
Pfam profile PF00515 TPR Domain
Length = 852
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = -3
Query: 92 EEAQRKLAEERLAMIEEQRKMDEERQKLKK 3
EEA+RK E+R +E+ RK +EE ++LK+
Sbjct: 647 EEARRKAEEQRKYQLEK-RKQEEELRRLKQ 675
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -3
Query: 110 ENNKKIEEA-QRKLAEERLAMIEEQRKMDEERQK 12
+N +++E A Q LAEE EEQRK E++K
Sbjct: 632 QNRQRLEVARQAALAEEARRKAEEQRKYQLEKRK 665
>At2g06210.1 68415.m00684 phosphoprotein-related low similarity to
phosphoprotein from Mus musculus GI:1236239; contains
Pfam profile PF00515 TPR Domain
Length = 1064
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = -3
Query: 92 EEAQRKLAEERLAMIEEQRKMDEERQKLKK 3
EEA+RK E+R +E+ RK +EE ++LK+
Sbjct: 859 EEARRKAEEQRKYQLEK-RKQEEELRRLKQ 887
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -3
Query: 110 ENNKKIEEA-QRKLAEERLAMIEEQRKMDEERQK 12
+N +++E A Q LAEE EEQRK E++K
Sbjct: 844 QNRQRLEVARQAALAEEARRKAEEQRKYQLEKRK 877
>At1g65470.1 68414.m07427 chromatin assembly factor-1 (FASCIATA1)
(FAS1) identical to FAS1 [Arabidopsis thaliana]
GI:4887626
Length = 815
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/41 (31%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Frame = -3
Query: 119 IMAENNKKIEEAQ--RKLAEERLAMIEEQRKMDEERQKLKK 3
I+ ENNK+ EE + +++ +++ +EQ++ ++E+ +LKK
Sbjct: 288 IVDENNKEKEETESRKRIKKQQDESEKEQKRREKEQAELKK 328
>At2g30960.1 68415.m03776 expressed protein
Length = 260
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -3
Query: 119 IMAENNKKIEEAQRKLAEERLAMIEEQRK 33
+ AE KKIEE K AEE M RK
Sbjct: 51 LQAEEEKKIEEEDLKKAEEEKRMNRSNRK 79
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,530,916
Number of Sequences: 28952
Number of extensions: 120604
Number of successful extensions: 593
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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