Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0610
         (350 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   2.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   3.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   3.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   3.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   3.7  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    20   8.5  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    20   8.5  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 298 LVFTHPALDSVCRYQTPSSHINLVSPFYYCR 206
           ++FT   L  +C Y    + I L+  +Y+CR
Sbjct: 273 IIFTMHLLFLLCIYYFYCALIILLCIYYFCR 303


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -1

Query: 149  IFGMLFASVSILDMMHRLTLNIFAIALSLASNE*RTSCT 33
            +F   FA + ++  +  L      IA  LAS E    CT
Sbjct: 1329 VFVFFFALILVIQFVAMLFHRFGTIAHILASTELNLCCT 1367


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -1

Query: 149  IFGMLFASVSILDMMHRLTLNIFAIALSLASNE*RTSCT 33
            +F   FA + ++  +  L      IA  LAS E    CT
Sbjct: 1329 VFVFFFALILVIQFVAMLFHRFGTIAHILASTELNLCCT 1367


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -1

Query: 149  IFGMLFASVSILDMMHRLTLNIFAIALSLASNE*RTSCT 33
            +F   FA + ++  +  L      IA  LAS E    CT
Sbjct: 1329 VFVFFFALILVIQFVAMLFHRFGTIAHILASTELNLCCT 1367


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -1

Query: 149  IFGMLFASVSILDMMHRLTLNIFAIALSLASNE*RTSCT 33
            +F   FA + ++  +  L      IA  LAS E    CT
Sbjct: 1329 VFVFFFALILVIQFVAMLFHRFGTIAHILASTELNLCCT 1367


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 19.8 bits (39), Expect = 8.5
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 194 YTRPTAIVKW 223
           YT+PTAI K+
Sbjct: 178 YTKPTAIQKY 187


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 19.8 bits (39), Expect = 8.5
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 187 RFIHTAHGNSKMDSRDLCA 243
           + + T +GN K  S D C+
Sbjct: 392 KHVKTHNGNGKKGSSDSCS 410


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,866
Number of Sequences: 336
Number of extensions: 1687
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6981810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)