Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0610
         (350 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    26   1.5  
SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|...    25   2.6  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    25   2.6  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    25   3.4  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    25   4.5  
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce...    25   4.5  
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          24   6.0  

>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
 Frame = +1

Query: 124 TLANNMPKI*ACISNEGQTKDRFIHTAHG-----NSKMDSRDLCAMMVFDNDRHY 273
           T+ N +  I   I+N+G T +R IH  H      N++ D ++L       N R Y
Sbjct: 464 TIRNGLTPIIFVINNKGYTIERLIHGLHAVYNDINTEWDYQNLLKGYGAKNSRSY 518


>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -1

Query: 227 ESILLLPWAVCINRSFVCPSLLIHAYIFGM-LFASVSILDMMHRLTLNIFAIALSL 63
           ES+ +LP    + RS    SL  H Y+F M L+  + I   ++R+ ++   I +++
Sbjct: 127 ESVAILPQLFMLQRSGETESLTAH-YLFAMCLYRGLYIPHWIYRIAVHKKVIGVAI 181


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 109 ISRIET-LANNMPKI*ACISNEGQTKDRFIHTAHGN 213
           I+ I T + +N+  I   I+N+G T +R IH  H +
Sbjct: 457 ITEISTCIRHNLKPIIFIINNDGYTIERLIHGLHAS 492


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = -2

Query: 184  PLFVLRY*YMLISLACCLLVFRFSI*CTV*LLIFSQSHCH*LVTNNALRAPLT 26
            P F L   Y L  L  C L+   S+  TV   I S  + H  +    LRAP++
Sbjct: 940  PYFYLGI-YTLFGLLSCALISLSSLTITVFCAIKSCRYLHDSMVKAVLRAPMS 991


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 155 AYIFGMLFASVSILDMMHRLTLNIFAIA 72
           +Y++  L A VS+L    R+T   F IA
Sbjct: 169 SYLYTFLLAIVSVLGFFTRITFLAFVIA 196


>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 74  RLRKY*ESNGASYRESKH*QTTCQRYKHVLVTKDKQR 184
           RLR   E    ++ E+   Q  C++Y  +L+  D QR
Sbjct: 167 RLRSSIEGLDEAFWEAPQRQLICEQYNWMLINIDNQR 203


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -2

Query: 292 FTHPALDSVCRYQTPSSHINLVSPF 218
           F+  A   +C ++  S+ +N++SPF
Sbjct: 565 FSLKANKDICNFRIHSNGVNIISPF 589


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,418,728
Number of Sequences: 5004
Number of extensions: 27062
Number of successful extensions: 45
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)