Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0610
         (350 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31789| Best HMM Match : Ion_trans (HMM E-Value=6.3e-37)             27   5.7  
SB_45877| Best HMM Match : Borrelia_orfA (HMM E-Value=0.23)            26   7.5  
SB_25488| Best HMM Match : Death (HMM E-Value=1.4e-12)                 26   9.9  
SB_55017| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.9  
SB_17748| Best HMM Match : DUF1312 (HMM E-Value=0.0024)                26   9.9  

>SB_31789| Best HMM Match : Ion_trans (HMM E-Value=6.3e-37)
          Length = 583

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +1

Query: 37  HEVRYSLLASDNAIAKILRVKRCIISRIET--LANNMPKI*ACISNEGQTKDRFIHTAHG 210
           H V  +     ++I  I R+K  +  R+E     +++    + I+NEG+T    +H  HG
Sbjct: 430 HSVYATSKRLTHSIMSINRLKNRLKKRVEVHLSTSSLGNEMSVIANEGETSTSGVHPRHG 489

Query: 211 NSKMD 225
              ++
Sbjct: 490 QEDIE 494


>SB_45877| Best HMM Match : Borrelia_orfA (HMM E-Value=0.23)
          Length = 734

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +1

Query: 136 NMPKI*ACISNEGQTKDRFIHTAHGNSKMDSRDLCAMMVFDNDRHYQGQDA*TQEREQ 309
           N+ K+ A  S   ++K R  HT+      D  D  A    + ++ Y G +  T   EQ
Sbjct: 48  NITKVYASKSPVSESKTRTDHTSEAEDVKDEGDTKATNETEKEKEYAGTEESTVVSEQ 105


>SB_25488| Best HMM Match : Death (HMM E-Value=1.4e-12)
          Length = 387

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 20/100 (20%), Positives = 44/100 (44%), Gaps = 7/100 (7%)
 Frame = +1

Query: 43  VRYSLLASDNAIAKILRVKRCIISRIE-------TLANNMPKI*ACISNEGQTKDRFIHT 201
           +R+ ++ SDN + + L   +C++ R+        +  ++ P+     +N    + +FI T
Sbjct: 171 IRFEVIKSDNIVRQTLFHFQCLLGRLSRSFGRTGSRHSSTPRPVTVENNTNNPQVQFIPT 230

Query: 202 AHGNSKMDSRDLCAMMVFDNDRHYQGQDA*TQEREQGDSL 321
              N+  D      +   D+ ++ Q  D   Q  E G+ +
Sbjct: 231 TEENNMADRAP--EVKATDSVKNIQNNDFTAQNGEPGEKM 268


>SB_55017| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -1

Query: 152 YIFGMLFASVSILDMMHRLTLNIFAIALSLASNE*RTSCTPY 27
           Y+   + +++  LD+M+R  +    +AL LA  + RT+  P+
Sbjct: 25  YLTLEVMSTLDFLDLMYRALIMCKTLALQLALPDKRTNTLPF 66


>SB_17748| Best HMM Match : DUF1312 (HMM E-Value=0.0024)
          Length = 1272

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +1

Query: 31  GVHEVRYSLLASDNAIAKILRVKRCIISRIETLANNMPKI*ACISNEGQTKDRFIHTAHG 210
           G+H +   LLA +N++  I+++ + ++S + T  N +       S     K    H  + 
Sbjct: 762 GIHAISVYLLAVENSLDTIIKI-QAVVSSLVTNGNQLS------SELSSAKQNLTHARNA 814

Query: 211 -NSKMDSRDLC 240
            N+K  ++ +C
Sbjct: 815 CNTKAFNKSVC 825


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,141,912
Number of Sequences: 59808
Number of extensions: 221108
Number of successful extensions: 476
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)