Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0610
(350 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81130-12|CAB61027.1| 332|Caenorhabditis elegans Hypothetical p... 28 1.6
Z81048-9|CAI79126.1| 560|Caenorhabditis elegans Hypothetical pr... 28 1.6
Z81048-8|CAB51463.1| 602|Caenorhabditis elegans Hypothetical pr... 28 1.6
Z79695-8|CAB01967.2| 332|Caenorhabditis elegans Hypothetical pr... 28 1.6
Z12017-7|CAH19088.1| 856|Caenorhabditis elegans Hypothetical pr... 28 1.6
Z12017-6|CAE47469.1| 734|Caenorhabditis elegans Hypothetical pr... 28 1.6
Z12017-5|CAA78052.2| 859|Caenorhabditis elegans Hypothetical pr... 28 1.6
AF039570-1|AAC00000.1| 602|Caenorhabditis elegans aryl hydrocar... 28 1.6
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical... 27 2.9
U50308-2|AAG24028.1| 791|Caenorhabditis elegans Hypothetical pr... 26 6.6
Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical pr... 26 8.7
>Z81130-12|CAB61027.1| 332|Caenorhabditis elegans Hypothetical
protein F27D4.1 protein.
Length = 332
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +1
Query: 76 IAKILRVKRCIISRIETLANNMPKI*ACISNEGQTKDRFIHTAHGNS 216
+AK+ VKR ++++ E L NN+P+ A + Q + F G+S
Sbjct: 68 VAKVNGVKRVLVAQDEKLKNNLPERVAPVILASQKQFNFTAITAGSS 114
>Z81048-9|CAI79126.1| 560|Caenorhabditis elegans Hypothetical
protein C41G7.5b protein.
Length = 560
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -2
Query: 325 PAGYRP-ALSLVFTHPALDSVCRYQTPSSHINL 230
P G+ P A LV HP + Y TPS+H +L
Sbjct: 506 PHGFTPDAQKLVPPHPQMSHFTEYPTPSTHHDL 538
>Z81048-8|CAB51463.1| 602|Caenorhabditis elegans Hypothetical
protein C41G7.5a protein.
Length = 602
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -2
Query: 325 PAGYRP-ALSLVFTHPALDSVCRYQTPSSHINL 230
P G+ P A LV HP + Y TPS+H +L
Sbjct: 548 PHGFTPDAQKLVPPHPQMSHFTEYPTPSTHHDL 580
>Z79695-8|CAB01967.2| 332|Caenorhabditis elegans Hypothetical
protein F27D4.1 protein.
Length = 332
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +1
Query: 76 IAKILRVKRCIISRIETLANNMPKI*ACISNEGQTKDRFIHTAHGNS 216
+AK+ VKR ++++ E L NN+P+ A + Q + F G+S
Sbjct: 68 VAKVNGVKRVLVAQDEKLKNNLPERVAPVILASQKQFNFTAITAGSS 114
>Z12017-7|CAH19088.1| 856|Caenorhabditis elegans Hypothetical
protein R08D7.6c protein.
Length = 856
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +2
Query: 182 RIDLYTRPTAIVKWTHEIYVR*WCLIT--TDTIKGRMRKHKRESRAIAC 322
R+ RP W+H V +C +T TD I+ + +R S IAC
Sbjct: 408 RVSAGYRPVPYHNWSHAFAVTHFCWLTLRTDAIRRALSDMERLSLLIAC 456
>Z12017-6|CAE47469.1| 734|Caenorhabditis elegans Hypothetical
protein R08D7.6b protein.
Length = 734
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +2
Query: 182 RIDLYTRPTAIVKWTHEIYVR*WCLIT--TDTIKGRMRKHKRESRAIAC 322
R+ RP W+H V +C +T TD I+ + +R S IAC
Sbjct: 411 RVSAGYRPVPYHNWSHAFAVTHFCWLTLRTDAIRRALSDMERLSLLIAC 459
>Z12017-5|CAA78052.2| 859|Caenorhabditis elegans Hypothetical
protein R08D7.6a protein.
Length = 859
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +2
Query: 182 RIDLYTRPTAIVKWTHEIYVR*WCLIT--TDTIKGRMRKHKRESRAIAC 322
R+ RP W+H V +C +T TD I+ + +R S IAC
Sbjct: 411 RVSAGYRPVPYHNWSHAFAVTHFCWLTLRTDAIRRALSDMERLSLLIAC 459
>AF039570-1|AAC00000.1| 602|Caenorhabditis elegans aryl hydrocarbon
receptor orthologAHR-1 protein.
Length = 602
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -2
Query: 325 PAGYRP-ALSLVFTHPALDSVCRYQTPSSHINL 230
P G+ P A LV HP + Y TPS+H +L
Sbjct: 548 PHGFTPDAQKLVPPHPQMSHFTEYPTPSTHHDL 580
>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
protein Y26D4A.9 protein.
Length = 1435
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 34 VHEVRYSLLASDNAIAKILRVKRCIISRIETLA 132
VH V+ + + +N I K + KR ++ I TLA
Sbjct: 1394 VHSVQQNKVVLNNMIGKDVEAKRYVVDNIHTLA 1426
>U50308-2|AAG24028.1| 791|Caenorhabditis elegans Hypothetical
protein F07C3.3 protein.
Length = 791
Score = 26.2 bits (55), Expect = 6.6
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = -2
Query: 295 VFTHPALDSVCRYQTPSSHINLVSPFY 215
+ TH D+ C++ P+S+ + PF+
Sbjct: 142 LLTHHPFDNTCKFPLPNSYAEDIIPFH 168
>Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical
protein T28B8.3a protein.
Length = 1838
Score = 25.8 bits (54), Expect = 8.7
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -1
Query: 215 LLPWAVCINRSFVCPSLLIHAYIFGMLFASVSILDMMHRLTLNIFA 78
L+ +NR +V P LL H L++S++ + HRLT I A
Sbjct: 386 LIKLLTTVNREYVAPKLLNH------LYSSLTAVSEPHRLTTLIEA 425
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,996,910
Number of Sequences: 27780
Number of extensions: 156831
Number of successful extensions: 363
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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