Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0609
         (286 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    26   1.2  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    24   3.7  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    24   3.7  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    24   4.9  
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    23   8.5  
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub...    23   8.5  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    23   8.5  

>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 90   DKSLHQLRTAMHHHPPNQERAVNLSILPV 4
            D +LH     + +H  + E A NLSILP+
Sbjct: 1061 DDNLHHGEIYLRNHILSDEMANNLSILPI 1089


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 138 SLFRCARPRVAQHH*RRIKILLRGTGVFE 224
           +L RC R R A H+ +RI   LR   ++E
Sbjct: 72  ALPRCLRRRAASHNIKRIPKGLRDRALYE 100


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -1

Query: 145  NNEAYLAG*SIVSYRELTRQIAPPTKNGHAPPPTESRKS 29
            N + YLA  SI++  E     APP  N     P  S  +
Sbjct: 930  NGDFYLAKFSILTLIEFLPSFAPPPSNDKQSTPQVSNSA 968


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 224 LEDTGPSKKNFNTSSVMLRDTRPSTPK 144
           L  T   K N    S  + DTRPSTP+
Sbjct: 425 LPTTTSPKVNPEPHSESISDTRPSTPR 451


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 126 QARVSLVTGN*PDKSLHQLRTAMHH 52
           + R ++   N P  S+HQLR A++H
Sbjct: 489 EVRQNIWLVNSPLSSVHQLREALNH 513


>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
           subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 214

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 221 EDTGPSKKNFNTSS 180
           E+  PSKKNF T S
Sbjct: 31  EENTPSKKNFETQS 44


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 118 SIVSYRELTRQIAPPTKNGHAPPPTESRKSC*SVN 14
           S  +Y    +  +P T + +APP   S +SC + N
Sbjct: 407 SNATYSGEQKTYSPTTLSTNAPPSPSSGRSCSNCN 441


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,166,308
Number of Sequences: 5004
Number of extensions: 18728
Number of successful extensions: 42
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)