Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0609
         (286 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0188 - 23433753-23436572                                         28   1.3  
05_06_0282 + 26915249-26915881                                         27   3.1  
04_04_1699 + 35462160-35462555,35463114-35463196,35463317-354633...    26   5.4  
03_05_0448 - 24426509-24426737,24427306-24427401,24427723-244278...    25   9.4  
03_05_0222 + 22082863-22082938,22083261-22083333,22083451-220834...    25   9.4  
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510...    25   9.4  
01_06_0201 - 27477392-27479728                                         25   9.4  

>04_04_0188 - 23433753-23436572
          Length = 939

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 103 RELTRQIAPPTKNGHAPPPTE 41
           RE  RQ+A  +  G APPPT+
Sbjct: 36  REALRQLAARSARGRAPPPTD 56


>05_06_0282 + 26915249-26915881
          Length = 210

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 91  RQIAPPTKNGHAPPPTESRKS 29
           RQ+APP   G+ PP T  R++
Sbjct: 156 RQLAPPPPMGNPPPNTHRRRT 176


>04_04_1699 +
          35462160-35462555,35463114-35463196,35463317-35463378,
          35463745-35463806,35463932-35463991,35464079-35464111,
          35464196-35464261,35464349-35464393
          Length = 268

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 79 PPTKNGHAPPPTESR 35
          PP K GH PPP   R
Sbjct: 52 PPRKRGHPPPPPPRR 66


>03_05_0448 -
           24426509-24426737,24427306-24427401,24427723-24427847,
           24428694-24428846,24429921-24430247,24431415-24431630,
           24431768-24432112,24433897-24434253
          Length = 615

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 93  PDKSLHQLRTAMHHHPPNQERAVNLSIL 10
           P +  HQ      HHP N E++ N  I+
Sbjct: 237 PGQDQHQKMVLGTHHPQNSEKSPNYLII 264


>03_05_0222 +
           22082863-22082938,22083261-22083333,22083451-22083496,
           22083639-22083753,22083847-22083926,22084022-22084621,
           22084718-22084822,22084916-22085248
          Length = 475

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 60  MHHHPPNQERAVNLSI 13
           +H HPPNQ +  N+++
Sbjct: 265 LHRHPPNQSQRPNVTV 280


>03_02_0027 +
           5100865-5100878,5102241-5102708,5102795-5103021,
           5103670-5104577
          Length = 538

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 82  APPTKNGHAPPPTESRKSC*SVNPSGV 2
           APP      PPP  +   C S + SGV
Sbjct: 253 APPPVTAPPPPPVAAPNDCVSSSSSGV 279


>01_06_0201 - 27477392-27479728
          Length = 778

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 178 TDDVLKFFLEGPVSSSPY 231
           TD+VL+    GP  SSPY
Sbjct: 176 TDNVLRLIYNGPEISSPY 193


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,527,916
Number of Sequences: 37544
Number of extensions: 153587
Number of successful extensions: 402
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 291966432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)