Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0609
         (286 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   1.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   2.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   2.2  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   3.9  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    19   9.0  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    19   9.0  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    19   9.0  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    19   9.0  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    19   9.0  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    19   9.0  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 1.7
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
 Frame = -1

Query: 163 RGRAHLNNEAYLAG*SIVSYRE---LTRQIAPPTKNGHAPPPTESRKS 29
           R ++HL    Y      V   +   + RQ+    + GH  PP +  +S
Sbjct: 238 RAQSHLEAHCYFDIEPTVQQHQPVTVNRQLNSDVQPGHGSPPVKQHRS 285


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +1

Query: 151 VLGLVSRNITDDVLKFFLEGPVSSSPY 231
           +LG +S  + +DV+ +     V+S P+
Sbjct: 430 ILGELSEKLREDVINYNCRSLVASVPF 456


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +1

Query: 151 VLGLVSRNITDDVLKFFLEGPVSSSPY 231
           +LG +S  + +DV+ +     V+S P+
Sbjct: 398 ILGELSEKLREDVINYNCRSLVASVPF 424


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 20.6 bits (41), Expect = 3.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 222 EPLQRLSNNRS*CPYMSWAAR 284
           EPL  L + R  C  +SW ++
Sbjct: 52  EPLLPLRHRRVTCDVLSWQSK 72


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 72  LRTAMHHHPPNQERAVNL 19
           L  AMH +PP    A++L
Sbjct: 132 LHLAMHDYPPLVSGALHL 149


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 224 LEDTGPSKKNFNTSSVMLRDTRPSTPK*RSLFSR 123
           +E +G   K + TSS  LR+         S +SR
Sbjct: 189 IEKSGKESKKYATSSNSLRNRTHGFQHTSSRYSR 222


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 224 LEDTGPSKKNFNTSSVMLRDTRPSTPK*RSLFSR 123
           +E +G   K + TSS  LR+         S +SR
Sbjct: 200 IEKSGKESKKYATSSNSLRNRTHGFQHTSSRYSR 233


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 224 LEDTGPSKKNFNTSSVMLRDTRPSTPK*RSLFSR 123
           +E +G   K + TSS  LR+         S +SR
Sbjct: 200 IEKSGKESKKYATSSNSLRNRTHGFQHTSSRYSR 233


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 224 LEDTGPSKKNFNTSSVMLRDTRPSTPK*RSLFSR 123
           +E +G   K + TSS  LR+         S +SR
Sbjct: 189 IEKSGKESKKYATSSNSLRNRTHGFQHTSSRYSR 222


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 72  LRTAMHHHPPNQERAVNL 19
           L  AMH +PP    A++L
Sbjct: 100 LHLAMHDYPPLVSGALHL 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,506
Number of Sequences: 438
Number of extensions: 1556
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5619645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)