Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0609
         (286 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A)            27   2.7  
At1g20670.1 68414.m02589 DNA-binding bromodomain-containing prot...    27   2.7  
At5g64720.1 68418.m08139 hypothetical protein                          25   8.1  

>At2g16360.1 68415.m01872 40S ribosomal protein S25 (RPS25A) 
          Length = 125

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -2

Query: 84 SLHQLRTAMHHHPPNQERAV 25
          S HQ RT  HHHP N    V
Sbjct: 19 SRHQRRTKSHHHPLNPPNPV 38


>At1g20670.1 68414.m02589 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 652

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 87  KSLHQLRTAMHHHPPNQERAVNLSILP 7
           K LH L +  H H PN +  +NL   P
Sbjct: 104 KLLHGLNSHSHRHSPNSQSDLNLDQTP 130


>At5g64720.1 68418.m08139 hypothetical protein
          Length = 155

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 157 GLVSRNITDDVLKFFLEGPVSSSP 228
           GL  ++ TD+++KFFL    +S P
Sbjct: 57  GLELKSCTDEIVKFFLSQTGTSEP 80


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,408,583
Number of Sequences: 28952
Number of extensions: 109845
Number of successful extensions: 243
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 251821800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)