Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0606
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   2.8  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    26   5.0  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    25   6.5  
SPAC4F10.05c |||mitochondrial lipoate-protein ligase |Schizosacc...    25   8.7  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.7  

>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 342 GGRAHSPPGVKWLLEPIDIYN 404
           GG  H P  V WLL P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 8/27 (29%), Positives = 19/27 (70%)
 Frame = +3

Query: 135 RKIVVLLLLNFINTYEERTVVERKVFF 215
           R++V  L++ +++T +  +++ER  FF
Sbjct: 75  RELVYNLMMRYVSTQKHLSIIERHTFF 101


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 377 PLNTRWAVSSPTQTSNKKKRMFVRCGNRTHELRCNNQGR 261
           P++T    SS T T  ++KR   + G +   +RC  Q R
Sbjct: 541 PVDTTPTNSSTTATGAQRKRRKFKFGKQIGPVRCTLQNR 579


>SPAC4F10.05c |||mitochondrial lipoate-protein ligase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 219

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 73  GGNLTAHAVGSGLALPLALLKSMG 2
           GG  T H  G  LA P+  LKS G
Sbjct: 84  GGQTTFHGPGQILAYPIIDLKSFG 107


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +3

Query: 351 AHSPPGVKWLLEPIDIYNVNAPPTLRYKF*NLSLVITAALPFKPKRITASRRNRQGG 521
           A  PP +K    P+DI N++A   L+     + L++   L        A RR  + G
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK----KIDLLLEEILQLDSAYDAAERRMIESG 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,649,728
Number of Sequences: 5004
Number of extensions: 54855
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)