Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0606
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0665 - 31003333-31003680,31003773-31003854,31004068-310041...    29   3.8  
01_01_0717 - 5559414-5559435,5559589-5559764,5559876-5559917,556...    28   6.7  

>01_06_0665 -
           31003333-31003680,31003773-31003854,31004068-31004198,
           31004272-31004370,31004511-31004666,31004877-31004951,
           31005554-31005736,31005833-31005983,31006732-31007027
          Length = 506

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 261 APLIVAPKLVGSIPTSDKHSFFFIACLGG 347
           APL +    V ++PT D+H  F+   LGG
Sbjct: 84  APLKMLISYVDNLPTGDEHGLFYALDLGG 112


>01_01_0717 -
           5559414-5559435,5559589-5559764,5559876-5559917,
           5560039-5560080,5560268-5560370,5560466-5560527,
           5561638-5561719,5567067-5567353,5568085-5568184,
           5568584-5568651,5569819-5569860,5570001-5570032,
           5572616-5572652
          Length = 364

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 275 NNQGRQLRTTKSVRVKSEYEKKYFPLYNSTLFVSINKIQK*QHY 144
           N +G+Q          SEY+      Y+S  F+ +N +Q+ QHY
Sbjct: 303 NERGQQPLNMMGAASTSEYDHMVNNPYDSRNFLQVNIMQQPQHY 346


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,574,314
Number of Sequences: 37544
Number of extensions: 401109
Number of successful extensions: 1026
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)