Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0606
         (608 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53147-4|AAA96115.1|  668|Caenorhabditis elegans Temporarily ass...    28   6.0  
U39653-3|AAL56623.1| 1702|Caenorhabditis elegans Prion-like-(q/n...    28   6.0  

>U53147-4|AAA96115.1|  668|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 117 protein.
          Length = 668

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = -2

Query: 298 IEPTSFGATIRGANYAPPSQSELSQSTRK---NTFLSTTVRSS 179
           +    FG   RG+   PP Q E+ +  RK   NTFL +++R S
Sbjct: 19  VHTNGFGIE-RGSLRRPPEQFEMQEKKRKEQENTFLRSSLRKS 60


>U39653-3|AAL56623.1| 1702|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
           isoform a protein.
          Length = 1702

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 310 SDVGIEPTSFGATIRGANYAPPSQSELSQSTRKNTF 203
           S VG+  TS G T +G    PP +   ++  +KN F
Sbjct: 737 SGVGVNGTSHGLTNQGPPPLPPPKRSRAKPKKKNAF 772


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,042,531
Number of Sequences: 27780
Number of extensions: 319631
Number of successful extensions: 717
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)