Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0606
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.4  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   7.1  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   9.4  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +3

Query: 126  HTSRKIVVLLLLNFINT 176
            H SR+++++L  NF+ T
Sbjct: 1122 HASRRVLIVLTRNFLLT 1138


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 202 GKYFFSYSDLTLTDLVVRSW 261
           G+Y F+Y  L   D+ V  W
Sbjct: 44  GRYMFTYLHLLYQDVHVMIW 63


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 251 TTKSVRVKSEYEKKYFPLYNSTLFVSINKIQK*QHYDL 138
           TTK   V  E++       N+T+  SINK+     YD+
Sbjct: 210 TTKLAIVVGEHDWSSKTETNATVLHSINKVIIHPKYDI 247


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,930
Number of Sequences: 438
Number of extensions: 3777
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)