Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0606
         (608 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g58250.1 68414.m06624 SABRE, putative similar to SABRE (GI:71...    31   0.45 
At5g61260.1 68418.m07687 chromosome scaffold protein-related con...    27   7.4  
At5g58910.1 68418.m07380 laccase, putative / diphenol oxidase, p...    27   7.4  
At4g02800.1 68417.m00380 expressed protein similar to A. thalian...    27   7.4  
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01...    27   7.4  

>At1g58250.1 68414.m06624 SABRE, putative similar to SABRE
           (GI:719291) [Arabidopsis thaliana]
          Length = 2603

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -1

Query: 365 RWAVSSPTQTSNKKKRMFVRCGNRTHELRCNNQ--GRQLRTTKS 240
           +++ S P + S    ++ VRC NR H+L   N   G QLR+ KS
Sbjct: 303 KYSSSFPEKVSFSLPKLDVRCVNREHDLLAENNITGIQLRSVKS 346


>At5g61260.1 68418.m07687 chromosome scaffold protein-related
           contains weak similarity to chromosome scaffold protein
           p85 [Moneuplotes crassus] gi|25990101|gb|AAN75020
          Length = 496

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -1

Query: 344 TQTSNKKKRMFVR-CGNRTHELRCNNQGRQLRTTKSVRVKSEYEKKYFPLYNSTLFVSIN 168
           TQ+  KKK +  R  G  T    C    R+    +  +V  E +KK   L+N+ +  ++N
Sbjct: 388 TQSEGKKKNLKDRRLGVETKTDSCEGSKREKVVLRHRKV--EGKKKMITLFNNVIEETVN 445

Query: 167 KIQK 156
           K+ K
Sbjct: 446 KLTK 449


>At5g58910.1 68418.m07380 laccase, putative / diphenol oxidase,
           putative similar to diphenol oxidase [Nicotiana
           tabacum][GI:1685087]
          Length = 523

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = +3

Query: 297 IPTSDKHSFFFIACLGGR--AHSPPGVKWLLEPIDIYNVNAPPT--LRYKF*NLSLVITA 464
           +PT+ +HS FF   LG         GV+ L+  I+      P T  L+  F N+S V T 
Sbjct: 312 VPTTVEHSLFFTVGLGANPCQSCNNGVR-LVAGINNVTFTMPKTALLQAHFFNISGVFTD 370

Query: 465 ALPFKP 482
             P KP
Sbjct: 371 DFPAKP 376


>At4g02800.1 68417.m00380 expressed protein similar to A. thaliana
           hypothetical protein T6B20.12 (1946366)
          Length = 333

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -1

Query: 368 TRWAVSSPTQTSNKKKRMFVRCGNRTHELRCNNQGRQLRTTKSVRVKSEYEKKY 207
           T +  SSP+ + +  KR++    NR   L   N       T ++ ++SE  K++
Sbjct: 26  TSFDSSSPSVSPSSDKRLWSNVRNRVDVLLEENSKNHKPVTNTIAIESERSKRF 79


>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM
           TIGR01612: reticulocyte binding protein; contains
           TIGRFAM TIGR00864: polycystin cation channel protein;
           similar to fimbriae-associated protein Fap1
           [Streptococcus parasanguinis] (GI:3929312)
          Length = 1498

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -2

Query: 343 PKQAIKKNECLSD-VGIEPTSFGATIRGANYAPPSQSELSQST 218
           P + I  +E ++D VG EP +    +   N  PP +SEL +S+
Sbjct: 275 PAETINGSESVNDHVGSEPVTVLEPVSVENGHPPVESELERSS 317


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,189,764
Number of Sequences: 28952
Number of extensions: 300867
Number of successful extensions: 654
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)