Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0605
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|ch...    27   1.6  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    26   3.7  
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    26   4.8  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    25   8.5  

>SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 522

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 301 CLLMHFMFVSQIIWALFIFLSSGCRDAR*SLG 206
           C L +F+F +  +W+  + L + CR+    LG
Sbjct: 139 CRLSYFIFCNVFLWSAMVCLMAACRNGPSLLG 170


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 460 SHSTPQRKTYILDEHTKHRLSHITFTPTLT*DQP 561
           ++STP RK Y+L+  TK +L +  +  +     P
Sbjct: 29  TNSTPFRKNYLLNGRTKLKLENFAYNASTEISSP 62


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 434 QSGRDSASSRTPRPNVKPISWTSTLNIVCL 523
           ++G    S  +P P++ P SWT+  N++ L
Sbjct: 120 ENGPIEISQSSPSPSLNPESWTNFANMLWL 149


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 422 YKCPQSGRDSASSRTPRPNVKPISWTSTL 508
           Y   +SGR S+SS +P P+    S +  L
Sbjct: 227 YDAERSGRSSSSSHSPSPSASSSSSSENL 255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,146,660
Number of Sequences: 5004
Number of extensions: 38648
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)