Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0605
         (599 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0661 - 26009838-26010950,26011302-26011802                       29   3.8  
01_06_1670 - 39007402-39008229,39008320-39008567,39009159-390093...    28   6.6  

>11_06_0661 - 26009838-26010950,26011302-26011802
          Length = 537

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/43 (23%), Positives = 28/43 (65%)
 Frame = +3

Query: 174 VMKENQMRTVVPNDQRASRQPDDKKIKSAQIICETNIKCIKRQ 302
           +++E  +R V+  D+R S +P  +++++ +++  T  +C++ Q
Sbjct: 472 LIEEGNLRKVL--DRRPSAEPTPRQLQAVELVAHTAARCLRLQ 512


>01_06_1670 -
           39007402-39008229,39008320-39008567,39009159-39009364,
           39009454-39011054
          Length = 960

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 440 GRDSASSRTPRPNVKPISW 496
           G D +   TPRP +KP+ W
Sbjct: 494 GGDKSEETTPRPKLKPLHW 512


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,239,454
Number of Sequences: 37544
Number of extensions: 224770
Number of successful extensions: 458
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)