Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0605
         (599 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19306| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=7e-08)            28   5.0  
SB_25436| Best HMM Match : 7tm_1 (HMM E-Value=9.49996e-41)             28   6.6  
SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0)                    28   6.6  

>SB_19306| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=7e-08)
          Length = 183

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 463 HSTPQRKTYILDEHTKHRLSHITFTP 540
           HS P+R+T   DE  K+  S +T TP
Sbjct: 28  HSVPRRQTSFGDEGLKYTFSGVTVTP 53


>SB_25436| Best HMM Match : 7tm_1 (HMM E-Value=9.49996e-41)
          Length = 321

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = -1

Query: 290 AFYVCFTNYLGTFYFFVVRLPGCPLIVRYDGAHLI 186
           AFYVC+ +Y GT++ +++      +I +YD  +++
Sbjct: 233 AFYVCYISY-GTYFLYLLFQDRVIIIQKYDIHYIV 266


>SB_15716| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1702

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 576  CLELRWLILC*CWCERYVRQTMFSVLVQDIGFTLGRG 466
            C + R  +L   WC+   + T F +L  DI  T G G
Sbjct: 1381 CKQFRQGVLWPSWCDGAGKTTTFKMLTGDIPVTSGEG 1417


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,064,469
Number of Sequences: 59808
Number of extensions: 289762
Number of successful extensions: 646
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)