Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0604
         (609 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5QM13 Cluster: Putative uncharacterized protein P0455H...    37   0.43 
UniRef50_Q8IQN4 Cluster: CG32156-PC, isoform C; n=11; Coelomata|...    34   2.3  
UniRef50_Q85HQ3 Cluster: NADH dehydrogenase subunit 2; n=1; Coop...    34   2.3  
UniRef50_Q9M3J5 Cluster: Putative membrane protein ycf1; n=2; Sp...    33   4.0  
UniRef50_Q1D7P3 Cluster: Putative uncharacterized protein; n=1; ...    33   5.3  

>UniRef50_Q5QM13 Cluster: Putative uncharacterized protein
           P0455H03.26; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           P0455H03.26 - Oryza sativa subsp. japonica (Rice)
          Length = 93

 Score = 36.7 bits (81), Expect = 0.43
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
 Frame = -3

Query: 331 NQSSHDRHGLIRRARDRKRYTEPIL--RKTLGKRANEELELYVPVRALSCKNHNHINLMT 158
           NQ    R+  ++R   R+R  E +   RK  G+   E++  Y P  A S K HN I +M 
Sbjct: 4   NQLDGPRNKRVKRRNKRERRREMMRKRRKRRGREDEEQVHSYQP-HAPSAK-HNGIEIMG 61

Query: 157 FNDIRNSGLDVSSIT 113
           FNDI + G ++S ++
Sbjct: 62  FNDI-SIGAEISQVS 75


>UniRef50_Q8IQN4 Cluster: CG32156-PC, isoform C; n=11;
           Coelomata|Rep: CG32156-PC, isoform C - Drosophila
           melanogaster (Fruit fly)
          Length = 1145

 Score = 34.3 bits (75), Expect = 2.3
 Identities = 23/83 (27%), Positives = 39/83 (46%)
 Frame = -3

Query: 346 PVQRRNQSSHDRHGLIRRARDRKRYTEPILRKTLGKRANEELELYVPVRALSCKNHNHIN 167
           P  R  +S   R    +R R+ +R T+ +    +  ++ EEL     +   +  N+N+I+
Sbjct: 482 PPVRDEESETQRKAHAKRVRETRRSTQGVTLDEI--KSAEELVKKKNMGMANNNNNNNIS 539

Query: 166 LMTFNDIRNSGLDVSSITDIENP 98
             T N I NSG + SS +    P
Sbjct: 540 TTTTNTISNSGNETSSASSTSAP 562


>UniRef50_Q85HQ3 Cluster: NADH dehydrogenase subunit 2; n=1;
           Cooperia oncophora|Rep: NADH dehydrogenase subunit 2 -
           Cooperia oncophora
          Length = 278

 Score = 34.3 bits (75), Expect = 2.3
 Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
 Frame = +2

Query: 329 VSPLHRFMFLVRYDIFGLRILYRITIRSRRF*LVFTSSL-------LVFDCEKCRYLSIL 487
           V+PLH ++F V   +FG  +++ +T +   F  V    +       L F    C    +L
Sbjct: 81  VAPLHFWIFSVTNSVFGFNLMWFLTFQKLPFLFVIVQMVEVKFLFFLFFGLMLCLLQMLL 140

Query: 488 ILVN*NLFARKNNNDHFNFRIMSDFFMFEICYLIFVMIY 604
           +    NL    ++ + FN+ ++S  ++F I  +IF+ +Y
Sbjct: 141 VKSFKNLLI-LSSTESFNWILLS--YVFSILNVIFIFLY 176


>UniRef50_Q9M3J5 Cluster: Putative membrane protein ycf1; n=2;
            Spinacia oleracea|Rep: Putative membrane protein ycf1 -
            Spinacia oleracea (Spinach)
          Length = 1833

 Score = 33.5 bits (73), Expect = 4.0
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -3

Query: 298  RRARDRKRYTEPILRKTLGKRANEELELYVPVRALSCKNHNHIN-LMTFNDIRNSGLDVS 122
            +   ++KRY+E + +K LG+R     +L  P   LS +    +  L+  N   N+G++ +
Sbjct: 1705 KHQNNQKRYSENVDKKFLGERNKNNFDLLAPENLLSPRRRRELRILLCLNSRNNNGVNTN 1764


>UniRef50_Q1D7P3 Cluster: Putative uncharacterized protein; n=1;
           Myxococcus xanthus DK 1622|Rep: Putative uncharacterized
           protein - Myxococcus xanthus (strain DK 1622)
          Length = 289

 Score = 33.1 bits (72), Expect = 5.3
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -3

Query: 340 QRRNQSSHDRHGLIRRARDRKRYT--EPILRKTLGKRANEELELYVPVRAL 194
           +R +   HD H L RRA +R+R T  EP +     K A   LE ++ VRAL
Sbjct: 33  RRASHRRHDVHKLRRRAANRRRTTNGEPRMNSNQSKAARPHLE-FLSVRAL 82


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 537,875,687
Number of Sequences: 1657284
Number of extensions: 10005869
Number of successful extensions: 22418
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22405
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43562448615
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)