Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0604
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    31   0.13 
SPAC12G12.08 |mrpl6||mitochondrial ribosomal protein subunit L16...    27   2.8  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    25   6.5  
SPAC1751.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.7  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   8.7  

>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = -3

Query: 298 RRARDRKRYTEPILRKTLGKRANEELELYVPVRALSCKNHNHINLMTFNDIRNS-GLDVS 122
           +R +D+K  +E   +K  GKR +  +E+      ++ KN+N  + +   D  NS G+DVS
Sbjct: 66  KRKKDQKEASE---KKKKGKRTSPTIEMTSLGSKVTSKNYNEFSTLEEEDEHNSHGVDVS 122

Query: 121 S 119
           +
Sbjct: 123 A 123


>SPAC12G12.08 |mrpl6||mitochondrial ribosomal protein subunit
           L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 213

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 229 EELELYVPVRALSCKNHNHINLMTFNDIRNSGLDVS 122
           E+L++  P   L+ +  N++NL   NDI   G+D +
Sbjct: 52  EQLQITGPHGTLNMRFPNYLNLSKTNDILKVGMDAN 87


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -1

Query: 474 YLHFSQSNTKRLDVNTS*NRRDLIVMRYRIRNPKMS*RTKNMNLCNG 334
           Y HF+    +  DV    +R+    + Y   NP +S +++ + +CNG
Sbjct: 804 YTHFTSPIRRYADVLA--HRQLAAAIDYETINPSLSDKSRLIEICNG 848


>SPAC1751.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 123

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -3

Query: 373 NVITY*KHEPVQRRNQSSHDRHGLIRRARDRKRYTEPILRKTLGKRANEE 224
           N +TY   + ++ + Q +H+R  +  +  DRK       +KT   R NE+
Sbjct: 75  NQVTYELDDKIKSKLQVAHEREAVFSKQSDRKISNNKADKKT--GRKNEK 122


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -2

Query: 110  YRKSTRVMHNCEHRIIV 60
            YR+S +++ N EHR+I+
Sbjct: 2055 YRESRKILLNIEHRLII 2071


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,360,856
Number of Sequences: 5004
Number of extensions: 46512
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)