Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0604
         (609 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26502| Best HMM Match : Band_41 (HMM E-Value=1.4e-16)               29   3.9  
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)                    29   3.9  

>SB_26502| Best HMM Match : Band_41 (HMM E-Value=1.4e-16)
          Length = 573

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +2

Query: 287 ASAPDKTVPIVRTLVSPLHRFMFLVRYDIFGLRILYRITIRSRRF 421
           AS P  +VP V +L SP+    F VRYD    + ++ I  R + +
Sbjct: 259 ASVPRASVPCV-SLTSPIQMTGFTVRYDFLRDKAVFTIFFRVKYY 302


>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 4833

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 183  FLQLNARTGTYNSNSSLARLPNVFRKIGSVYRLRSRARRIRP 308
            FL ++ARTG    N ++A  P       ++Y L  RAR I P
Sbjct: 2754 FLAVDARTGMITLNRAIAFKPFSALPNPNIYNLTVRARNIYP 2795


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,814,422
Number of Sequences: 59808
Number of extensions: 329770
Number of successful extensions: 713
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)