Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0604
         (609 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AF016435-4|AAB65880.2|  330|Caenorhabditis elegans Serpentine re...    28   4.5  
Z49068-5|CAA88863.2|  707|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical protein
            T20G5.1 protein.
          Length = 1681

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 9    HVWY*ELYIVLYNKFRNYDDTMLAIMHYPS 98
            H+W  EL + LY+K+  YD+  L +M +P+
Sbjct: 1358 HLWS-EL-VFLYDKYEEYDNAALTMMQHPT 1385


>AF016435-4|AAB65880.2|  330|Caenorhabditis elegans Serpentine
           receptor, class w protein8 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/92 (17%), Positives = 39/92 (42%)
 Frame = +2

Query: 323 TLVSPLHRFMFLVRYDIFGLRILYRITIRSRRF*LVFTSSLLVFDCEKCRYLSILILVN* 502
           +++ P+   +  V     G  ++  +TI S  +  ++ S   +    +C        V  
Sbjct: 148 SIIFPMSSAIDFVMRPKIGCLLVLTVTIMSSAYSFLYFSRAKIVKERECYLHERSTYV-- 205

Query: 503 NLFARKNNNDHFNFRIMSDFFMFEICYLIFVM 598
            L+  +N+N    F++M  +    +C+L  ++
Sbjct: 206 -LYTHENSNKEMQFQLMDGYIAMVVCFLYIIV 236


>Z49068-5|CAA88863.2|  707|Caenorhabditis elegans Hypothetical
           protein K01C8.5 protein.
          Length = 707

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = -3

Query: 382 QSENVITY*KHEPVQRRNQSSHDRHGLIRRA---RDRKRYTEPILRKTLGKRANEELELY 212
           +S +++T  +  P+ RR    + ++    R     DR R+TE ++++ L K   +E   Y
Sbjct: 106 RSPDILTDDRGRPIPRRGMFLNAKYSEAARPPIDEDRIRHTEDVIKRMLYKGRRKESMGY 165

Query: 211 VPVR 200
            P R
Sbjct: 166 YPNR 169


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 434  TSSLLVFDCEKCRYLSILILVN*NLFARKNNN 529
            T SL+  D +K +YL   + +  N+F +K NN
Sbjct: 7002 TGSLITVDFDKSKYLDTTVHMFANIFLKKLNN 7033


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,734,807
Number of Sequences: 27780
Number of extensions: 249032
Number of successful extensions: 638
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)