Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0604
         (609 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g07630.1 68414.m00818 protein phosphatase 2C family protein /...    29   1.8  
At1g10090.1 68414.m01137 expressed protein                             27   7.4  
At1g04860.1 68414.m00482 ubiquitin-specific protease 2 (UBP2) id...    27   9.7  

>At1g07630.1 68414.m00818 protein phosphatase 2C family protein /
           PP2C family protein similar to protein phosphatase-2c
           (GI:3608412) [Mesembryanthemum crystallinum]; contains
           Pfam PF00481 : Protein phosphatase 2C domain
          Length = 662

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = -3

Query: 310 HGLIRRARDRKRYTEPILRKTLGKRANE-ELELYVPVRALSCKNHNHINLMTFNDIRNSG 134
           HGL  R   RKR    ILR+ + K  +  +  +  P++++   ++  I      ++ N  
Sbjct: 173 HGLALRVGSRKRSLVRILRRAISKTMSRGQNSIVAPIKSVKDSDNWGIRSEKSRNLHNEN 232

Query: 133 LDVSSI 116
           L V+S+
Sbjct: 233 LTVNSL 238


>At1g10090.1 68414.m01137 expressed protein 
          Length = 762

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 82  LCITLVDFRYLLLRKRPTQNCVY 150
           +C+ LV   Y +LRK+P   CVY
Sbjct: 16  ICVVLVSL-YSILRKQPANYCVY 37


>At1g04860.1 68414.m00482 ubiquitin-specific protease 2 (UBP2)
           identical to GI:11993463
          Length = 961

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = -3

Query: 340 QRRNQSSHDRHGLIRRARDRKRYTEPILRKTLGKRANEE 224
           Q R    HD H L+R   D     E  LRK  G   N+E
Sbjct: 307 QFRGYDQHDSHELLRCLLDSLSTEESALRKKRGVSDNDE 345


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,611,227
Number of Sequences: 28952
Number of extensions: 218207
Number of successful extensions: 465
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)