Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0602
(621 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 93 2e-20
SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|ch... 30 0.31
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 27 2.2
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 27 2.9
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha... 26 3.8
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 5.1
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo... 26 5.1
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 25 8.8
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 93.5 bits (222), Expect = 2e-20
Identities = 43/90 (47%), Positives = 57/90 (63%), Gaps = 4/90 (4%)
Frame = +2
Query: 254 LFDQAKPSVNCMFKCTEIIRKYCLGDKPVSIELLSDQIKNFSRT----VNYEDPNLNISY 421
+F KPS +++ +R CLGDKP +ELLSD T +NY DPN+N++
Sbjct: 66 IFHDNKPSRKALYQALRSLRLNCLGDKPCELELLSDTSLTTGDTAVCNINYLDPNINVAI 125
Query: 422 PILSIHGNHDDPVGQGSVSSLDILSITGLL 511
P+ SIHGNHDDP G G S+LDIL +TGL+
Sbjct: 126 PVFSIHGNHDDPSGDGRYSALDILQVTGLV 155
Score = 72.9 bits (171), Expect = 3e-14
Identities = 31/51 (60%), Positives = 43/51 (84%)
Frame = +3
Query: 102 DDTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLILLGGD 254
++T+RILI+SD H+G+ E DPVRG DSF++F E+L +A + DVD+ILLGGD
Sbjct: 15 ENTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERDVDMILLGGD 65
Score = 40.3 bits (90), Expect = 2e-04
Identities = 15/39 (38%), Positives = 29/39 (74%)
Frame = +1
Query: 505 VINYFGKWTDYTHVRISPVLLQKGLTRLASMDLAILKDQ 621
++NYFG+ + ++ +SP+LLQKG T+LA ++ ++D+
Sbjct: 154 LVNYFGRVPENDNIVVSPILLQKGFTKLALYGISNVRDE 192
>SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 105
Score = 29.9 bits (64), Expect = 0.31
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -2
Query: 260 QTITS*KYQINITLYRKRQNFFKSYKAIFSAYRIIFHETKMN 135
+ +T+ + + I L R+ + YK +FS YR+ F ++N
Sbjct: 28 RNVTNVYFSLRILLNRQNEGNNCKYKLVFSLYRVSFRRMRLN 69
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 27.1 bits (57), Expect = 2.2
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +3
Query: 3 PIGIIVFKLFEITS*SSCTSKIMIENDISAWSP--DDTLRILIASD 134
P+G++ KL IT + T+ +++EN IS+ SP D+ L L D
Sbjct: 386 PMGVLGEKLGNITDVEAYTNALLLENGISS-SPFSDEVLNCLPPDD 430
>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 26.6 bits (56), Expect = 2.9
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -3
Query: 280 DRRFSLIKQSPPK-SIKSTSHCTARDKTSSKAIKLSSPRTGSFSMK 146
D++ +K+ P K S+K+ + T RD+ S +SP+ S+K
Sbjct: 309 DKKQVTVKEVPKKLSVKNAAKTTNRDEDSKGKKAKASPKVSQSSLK 354
>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 535
Score = 26.2 bits (55), Expect = 3.8
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +3
Query: 90 AWSPDDTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLILLG 248
+WSP L I +A +I+L E P R + I +V S+A + D++ +G
Sbjct: 198 SWSPKGDLAIGLAENIYLWSKELGPTRVLEESI--YDVSSVAYSYNGDILAVG 248
>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 368 KNFSRTVNYEDPNLNISYPILSIHGNHDDPVGQGSVSSL 484
K ++ +N D ++ I P+L N DD +G+ + +L
Sbjct: 110 KVYTSKINTIDTSIPIDDPLLREFSNRDDSIGEKMLKNL 148
>SPAC26H5.07c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 505
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Frame = +1
Query: 511 NYFGKW--TDYTHVRISPVLL 567
NYFG TDY H+ ++P+LL
Sbjct: 168 NYFGNLDATDYPHLFLNPILL 188
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.0 bits (52), Expect = 8.8
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 135 IHLGFMENDPVRGE-DSFIAFEEVLSLAVQCDVDLILLGGDCLIKLNLLSIVCLNV 299
I++ + N+P SF+ EE+ A + +++ L KLNLL+I+ LN+
Sbjct: 222 ININLIVNEPCMNLLYSFLQIEELRCAACETMTEIVNKKMKPLEKLNLLNILNLNL 277
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,550,104
Number of Sequences: 5004
Number of extensions: 53229
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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