Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0602
(621 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1284 + 32376870-32376874,32376876-32376935,32377166-323773... 99 2e-21
08_01_0522 - 4545166-4545174,4545295-4545447,4545566-4545727,454... 86 2e-17
02_04_0454 + 23064081-23064139,23064297-23064366,23064553-230658... 30 1.3
03_06_0588 - 34924061-34924644,34924662-34925058 29 2.3
09_04_0646 - 19194261-19195730 29 3.0
06_01_0610 - 4415080-4415461,4415872-4416851 29 3.0
02_01_0702 - 5243064-5243159,5243280-5243331,5243453-5243526,524... 29 3.9
10_08_0845 - 20968051-20968188,20968769-20968843,20969399-209694... 28 5.2
10_02_0091 - 5190536-5191794,5191878-5192030,5192501-5193099,519... 28 5.2
12_02_0179 - 14952398-14952511,14953333-14953356,14953543-149536... 28 6.9
10_07_0081 - 12716130-12716271,12716367-12716449,12716729-127167... 28 6.9
09_06_0227 - 21684490-21685767 27 9.1
02_05_1032 + 33637108-33638421 27 9.1
>04_04_1284 +
32376870-32376874,32376876-32376935,32377166-32377301,
32377439-32377596,32377791-32377881,32377975-32378094,
32378166-32378234,32378354-32378445,32378578-32378680,
32378761-32378868,32378949-32379011,32379073-32379144,
32379322-32379399,32379478-32379540,32379617-32379680,
32379817-32379902,32380456-32380569,32380760-32380837,
32381068-32381303,32381486-32381576,32381706-32381894,
32382082-32382117
Length = 703
Score = 99.1 bits (236), Expect = 2e-21
Identities = 44/89 (49%), Positives = 61/89 (68%), Gaps = 3/89 (3%)
Frame = +2
Query: 254 LFDQAKPSVNCMFKCTEIIRKYCLGDKPVSIELLSDQIKNFSRT---VNYEDPNLNISYP 424
LF + KPS + + K EI+R+YCL D+PV +++SDQ NF VNYEDPN N+ P
Sbjct: 77 LFHENKPSRSTLVKTIEILRRYCLNDQPVKFQVVSDQTINFPNRFGQVNYEDPNFNVGLP 136
Query: 425 ILSIHGNHDDPVGQGSVSSLDILSITGLL 511
+ +IHGNHDDP G ++S++DILS L+
Sbjct: 137 VFTIHGNHDDPAGVDNLSAIDILSACNLV 165
Score = 68.1 bits (159), Expect = 5e-12
Identities = 31/50 (62%), Positives = 39/50 (78%)
Frame = +3
Query: 105 DTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLILLGGD 254
+TLR+L+A+D HLG+ME D +R DSF AFEE+ SLA Q VD +LLGGD
Sbjct: 27 NTLRVLVATDCHLGYMEKDEIRRFDSFEAFEEICSLAEQNKVDFVLLGGD 76
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = +1
Query: 505 VINYFGKW----TDYTHVRISPVLLQKGLTRLASMDLAILKDQ 621
++NYFGK + + + PVL++KG T +A L ++D+
Sbjct: 164 LVNYFGKMDLGGSGVGEIAVYPVLVKKGTTFVALYGLGNIRDE 206
>08_01_0522 -
4545166-4545174,4545295-4545447,4545566-4545727,
4545821-4545895,4545974-4546087,4546257-4546339,
4546496-4546556,4546664-4546726,4546804-4546908,
4547454-4547525,4547602-4547664,4547746-4547853,
4547937-4548039,4548131-4548207,4548335-4548403,
4548488-4548607,4548749-4548839,4549020-4549177,
4549696-4549834,4551164-4551186
Length = 615
Score = 85.8 bits (203), Expect = 2e-17
Identities = 39/84 (46%), Positives = 54/84 (64%), Gaps = 3/84 (3%)
Frame = +2
Query: 254 LFDQAKPSVNCMFKCTEIIRKYCLGDKPVSIELLSDQ---IKNFSRTVNYEDPNLNISYP 424
LF + KPS++ + K EIIR YCL D V +++SDQ ++N VN+EDPN NI P
Sbjct: 64 LFHENKPSISTLVKSMEIIRSYCLNDHQVQFQVVSDQAACLQNRFGRVNFEDPNFNIGLP 123
Query: 425 ILSIHGNHDDPVGQGSVSSLDILS 496
+ ++HG HD P G +S+ DILS
Sbjct: 124 VFTVHGTHDGPAGVDGLSATDILS 147
Score = 62.1 bits (144), Expect = 3e-10
Identities = 30/58 (51%), Positives = 41/58 (70%), Gaps = 2/58 (3%)
Frame = +3
Query: 87 SAWSPDDT--LRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLILLGGD 254
++W ++ LRIL+A+D HLG++E D +R DSF FEE+ SLAV VD ILLGG+
Sbjct: 6 ASWDEEENSMLRILVATDCHLGYLEKDEIRRFDSFDTFEEICSLAVINKVDFILLGGN 63
>02_04_0454 +
23064081-23064139,23064297-23064366,23064553-23065815,
23065946-23066515
Length = 653
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +3
Query: 177 DSFIAFEEVLSLAVQCDVDLILLGGDCLIKLNLLSIV--CLNVQ 302
D+F + E V S+ + DL +L GDCL +L+ ++ CL +Q
Sbjct: 11 DTFFSNESVRSVCTEVATDLQILVGDCLYQLHKFPLLSKCLLLQ 54
>03_06_0588 - 34924061-34924644,34924662-34925058
Length = 326
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +3
Query: 75 ENDISAWSPD--DTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDV 230
END AW PD + A + L F + V S IA +V L +CDV
Sbjct: 52 ENDFIAWHPDKHGIFSVRSAYSLALDFSRTE-VSSSSSSIAMSKVWKLVWKCDV 104
>09_04_0646 - 19194261-19195730
Length = 489
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 491 LSITGLLIILVNGPTTRT*EYHQYFCKKVLRGSPL 595
LSITGL V GP R + +F K ++ G P+
Sbjct: 289 LSITGLRFFTVYGPWGRPDMAYFFFAKSIVSGEPI 323
>06_01_0610 - 4415080-4415461,4415872-4416851
Length = 453
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 491 LSITGLLIILVNGPTTRT*EYHQYFCKKVLRGSPL 595
LSITGL V GP R + +F + +L+G P+
Sbjct: 280 LSITGLRFFTVYGPWGRPDMAYFFFTRNILQGKPV 314
>02_01_0702 -
5243064-5243159,5243280-5243331,5243453-5243526,
5243633-5243683,5243840-5243899,5244131-5244232,
5244416-5244502,5244759-5244803,5245241-5245283,
5245371-5245499,5245599-5245676,5245762-5245811,
5246026-5246108,5246780-5246843,5246953-5247066,
5247558-5247623,5247713-5247778,5248405-5248446,
5248590-5248652,5248744-5248794
Length = 471
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 305 IIRKYCLGDKPVSIELLSDQIKNFSRTVNYEDPN-LNISYPILSIHGNHD 451
+ R+ G K ++ + D NFS + ++DP L + ++IH +H+
Sbjct: 223 VYRRIFKGGKTIAADNALDYAANFSHMLGFDDPKMLELMRLYITIHTDHE 272
>10_08_0845 -
20968051-20968188,20968769-20968843,20969399-20969425,
20969512-20969649,20969765-20969880,20970000-20970081,
20970105-20970226,20970314-20970368
Length = 250
Score = 28.3 bits (60), Expect = 5.2
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = -1
Query: 525 FTKIINNPVIERISRELTLPWPTGSS*LPCIERIG*EIFKLGSS*LTVLE 376
F K ++ VIE + ++ P+GSS I +G FKLGS LT+L+
Sbjct: 126 FNKEVDK-VIEEMKLKVVYTVPSGSSDDSGITSLGSRSFKLGSDDLTMLK 174
>10_02_0091 -
5190536-5191794,5191878-5192030,5192501-5193099,
5193771-5193837,5194177-5195170
Length = 1023
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 180 SFIAFEEVLSLAVQCDVDLILLGGDCLIKLNLLSIVCLN 296
SF E ++ V CD+D+ L+G D KL L + C N
Sbjct: 173 SFTISEMMIITVVSCDLDVFLIGQDNTPKL-LCMVACPN 210
>12_02_0179 -
14952398-14952511,14953333-14953356,14953543-14953670,
14953765-14953891,14953930-14954013,14954245-14954397,
14954478-14954579,14955036-14955128,14955289-14955350,
14955395-14955522,14957053-14957291,14958040-14958471,
14958774-14958912,14960564-14960883
Length = 714
Score = 27.9 bits (59), Expect = 6.9
Identities = 8/24 (33%), Positives = 18/24 (75%)
Frame = +3
Query: 234 LILLGGDCLIKLNLLSIVCLNVQK 305
++L+G C+ K+ + S++C+N Q+
Sbjct: 536 ILLIGTSCVKKMKISSVICINEQQ 559
>10_07_0081 -
12716130-12716271,12716367-12716449,12716729-12716785,
12716886-12716942,12717014-12717113,12717204-12717274,
12718284-12718460,12719142-12719312,12722151-12722234,
12722310-12722354,12722447-12722537,12722745-12722863,
12723213-12723434,12723630-12723854,12725366-12725571,
12726081-12726258,12726702-12726762,12727930-12728039,
12728126-12728257,12729136-12729208,12729608-12729645,
12730373-12730474,12730565-12730622,12731071-12731172,
12731240-12731386,12732023-12732159,12732256-12732405,
12733103-12733259,12733615-12733673,12733982-12734138,
12734209-12734354,12739177-12739320,12739478-12739606
Length = 1309
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +3
Query: 90 AWSPDDTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLILLGGDCLI 263
++S + + +A+ +HLG +E P + DS +E +Q DL+++ G L+
Sbjct: 310 SFSHQEAIFRTVAAILHLGNIEFSPGKEFDSSAIKDEKSKFHLQMAADLLMVDGSLLL 367
>09_06_0227 - 21684490-21685767
Length = 425
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +3
Query: 144 GFMENDPVRGEDSFIAFEEVLSLAVQCDVDLILLGGDCLIKLNLL 278
GF+E E +A +E L++A+Q + I++ DCL +N++
Sbjct: 306 GFIERCTSPLESELLACKEGLNMALQWTLLSIIVETDCLTAVNMI 350
>02_05_1032 + 33637108-33638421
Length = 437
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 491 LSITGLLIILVNGPTTRT*EYHQYFCKKVLRGSPL 595
LSITGL V GP R + F + +L+G P+
Sbjct: 268 LSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPI 302
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,169,900
Number of Sequences: 37544
Number of extensions: 289897
Number of successful extensions: 685
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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