Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0602
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.34 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   2.4  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    23   2.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.2  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   3.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   7.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.7  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   9.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 63   KIMIENDISAWSPDDTLRILIASDIHLG 146
            +I+ EN+I A  P DT+ I+ A +   G
Sbjct: 951  RIVAENEIGASDPSDTVTIITAEEAPSG 978


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 304 FCTFKHTIDRRFSLIKQSPPKSIKS 230
           F   K   DRR     +  PKSIKS
Sbjct: 372 FAEIKEKCDRRTGKTTEENPKSIKS 396


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 304 FCTFKHTIDRRFSLIKQSPPKSIKS 230
           F   K   DRR     +  PKSIKS
Sbjct: 83  FAEIKEKCDRRTGKTTEENPKSIKS 107


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 51   SCTSKIMIENDISAWSPDDTLRILIASDI 137
            SC  K + E  +S+W  D+  +++ ASD+
Sbjct: 927  SCRCKFLQE--LSSWVSDNAHKVVDASDV 953


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 304 FCTFKHTIDRRFSLIKQSPPKSIKS 230
           F   K   DRR     +  PKSIKS
Sbjct: 372 FADIKEKCDRRNGKTTEENPKSIKS 396


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = -3

Query: 466 LANGIIMIAVY*ENRVRNI 410
           L N ++++AVY  +++RN+
Sbjct: 81  LGNVLVILAVYHTSKLRNV 99


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 360 SDSNSILTGLSPRQYLRIIS 301
           S S+ ILT +SP  Y++ IS
Sbjct: 313 SGSSGILTPVSPYGYVKPIS 332


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 301 RNNPQILSWG*TG*YRVAV 357
           R+NPQIL++  +  Y++AV
Sbjct: 312 RDNPQILTYKYSKRYKMAV 330


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,277
Number of Sequences: 438
Number of extensions: 3566
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)