Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0601
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo...    31   0.11 
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    31   0.19 
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch...    27   1.8  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    27   1.8  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    26   4.1  
SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|ch...    26   4.1  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    26   4.1  
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi...    26   5.4  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   5.4  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   7.1  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    25   7.1  

>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
           Srk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 580

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
 Frame = +3

Query: 444 YELCEIIGKGPFSLVRRCVHRQQHNSLQ*KLWMWPASLLVP-------GLSTADLKREAT 602
           Y L + +G G FS V + +H +    +  K+         P       G+ + ++ +E  
Sbjct: 124 YTLLQKMGDGAFSNVYKAIHNRTGEKVAIKVVQRAQPNTDPRDPRKRQGVESHNILKEVQ 183

Query: 603 ICHMLKHPHIVELLE 647
           I   +KHP+I++LLE
Sbjct: 184 IMRRVKHPNIIQLLE 198


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 18/68 (26%), Positives = 32/68 (47%)
 Frame = +3

Query: 444 YELCEIIGKGPFSLVRRCVHRQQHNSLQ*KLWMWPASLLVPGLSTADLKREATICHMLKH 623
           Y + E +G+G F  V+   H +    +  K       LL        ++RE +   +L+H
Sbjct: 34  YIIRETLGEGSFGKVKLATHYKTQQKVALKFIS--RQLLKKSDMHMRVEREISYLKLLRH 91

Query: 624 PHIVELLE 647
           PHI++L +
Sbjct: 92  PHIIKLYD 99


>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
           Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 830

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 18/68 (26%), Positives = 35/68 (51%)
 Frame = +3

Query: 444 YELCEIIGKGPFSLVRRCVHRQQHNSLQ*KLWMWPASLLVPGLSTADLKREATICHMLKH 623
           Y +   IG+G F++V +  H + +  +  K  +     L   L   +L+ E +I   ++H
Sbjct: 14  YVIRSEIGRGSFAIVYKGKHTETNRVISIKSVL--TKKLTKKL-LENLESEISILKEIRH 70

Query: 624 PHIVELLE 647
            H+VEL++
Sbjct: 71  VHVVELID 78


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
 Frame = +3

Query: 432 FDDVYELC-EIIGKGPFSLVRRCVHRQQHNSLQ*KLWMWPASLLVPGLS----TADLKRE 596
           F + Y  C E+IG+G F +VR        NS    L+        P  S    T  L  E
Sbjct: 346 FVEKYGRCQEVIGRGAFGVVRIAHKVDPQNSGSETLYAVKEFRRKPAESQKKYTKRLTSE 405

Query: 597 ATICHMLKHPHIVELLE 647
             I   L+HP+++  L+
Sbjct: 406 FCISSSLRHPNVIHTLD 422


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
 Frame = +3

Query: 447 ELCEIIGKGPFSLVRRCVHRQQHNSLQ*KLWMWPASLLVPGLSTADLKR-------EATI 605
           +L  +IG+G  S +R    R        KL ++ A +  P L T+ L+R       E T 
Sbjct: 242 KLNNVIGEGASSFIRVINDRN-------KLPIYVAKVFRPPLDTSLLRRYVRYFIAEYTF 294

Query: 606 CHMLKHPHIVELLE 647
              L+HP+I+++L+
Sbjct: 295 ASTLRHPNIIKVLD 308


>SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 380 GKNINKHFSTAFDPFQGWLRPGTNVVFI 297
           GKN   HFS    P+  + + G NV F+
Sbjct: 24  GKNTGVHFSELLIPYNVFKKAGFNVQFV 51


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 444 YELCEIIGKGPFSLVRRCV 500
           YE+ + +GKG F  V RC+
Sbjct: 699 YEVVDFLGKGSFGQVLRCI 717


>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = -2

Query: 321 PRDKRCIYKDTIHYRNTE*YFD----DLQKI*SNLVQNNICRIKLYTFYLVKVE 172
           PRD++ I K T H    E  FD    D   + +   + NIC  K + F  + V+
Sbjct: 110 PRDRKTIRKSTFHPLKKELVFDIDMTDYDDVRTCCSKTNICE-KCWPFITIAVQ 162


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 444 YELCEIIGKGPFSLVRRCVHRQQ 512
           YE+ + +GKG F  V +C+  ++
Sbjct: 518 YEIIDTVGKGSFGQVLKCIDHKR 540


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 237 SNLVQNNICRIKLYTFYLVKVEARKVPNKN 148
           S+ +++   R+KL T  L K    KVPNKN
Sbjct: 201 SSTIKSPPSRVKLPTSILSKSPPLKVPNKN 230


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 421 TKCYSTMCTNCAKSSERVHSVWFVAVCTGNSTTVCSENC 537
           +K  S   TN  + S R HSV+ + +   NSTT   E C
Sbjct: 667 SKNRSVAATNANEHSSRSHSVFMLHLNGSNSTT--GETC 703


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,421,964
Number of Sequences: 5004
Number of extensions: 45463
Number of successful extensions: 120
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)