Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0599
(637 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 159 4e-40
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 157 2e-39
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 100 2e-22
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 73 3e-14
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 29 0.74
SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dl... 26 4.0
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 5.2
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.9
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 25 6.9
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 6.9
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po... 25 6.9
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 25 9.1
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 159 bits (385), Expect = 4e-40
Identities = 68/100 (68%), Positives = 82/100 (82%)
Frame = +1
Query: 217 FQHFLQRDRSWQAVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 396
F F + VPR+++VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHY
Sbjct: 49 FSTFFSETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHY 108
Query: 397 TIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTALG 516
T+GKE+VD V D+IR++AD C+GLQGFL+FHSFGGGT G
Sbjct: 109 TVGKELVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSG 148
Score = 98.3 bits (234), Expect = 8e-22
Identities = 43/63 (68%), Positives = 47/63 (74%)
Frame = +2
Query: 74 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 253
MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 254 PYP 262
P
Sbjct: 61 YVP 63
Score = 71.3 bits (167), Expect = 1e-13
Identities = 30/42 (71%), Positives = 40/42 (95%)
Frame = +3
Query: 510 SGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSI 635
SGF +LL+ERL+++Y KKSKL+F++YPAPQVST+VVEPYNS+
Sbjct: 147 SGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNSV 188
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 157 bits (380), Expect = 2e-39
Identities = 65/100 (65%), Positives = 83/100 (83%)
Frame = +1
Query: 217 FQHFLQRDRSWQAVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 396
F F + VPR+++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHY
Sbjct: 53 FGTFFSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHY 112
Query: 397 TIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTALG 516
T+GKE++D VL+RIR++AD C+GLQGFL+FHSFGGGT G
Sbjct: 113 TVGKEMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSG 152
Score = 91.9 bits (218), Expect = 7e-20
Identities = 47/68 (69%), Positives = 49/68 (72%), Gaps = 5/68 (7%)
Frame = +2
Query: 74 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSE 238
MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG PT+ K +D F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 239 TGAGKPYP 262
TG GK P
Sbjct: 60 TGQGKFVP 67
Score = 70.1 bits (164), Expect = 2e-13
Identities = 29/42 (69%), Positives = 39/42 (92%)
Frame = +3
Query: 510 SGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSI 635
SG +LL+ERL+++YGKKS L+F++YPAPQVST+VVEPYNS+
Sbjct: 151 SGLGALLLERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSV 192
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 100 bits (240), Expect = 2e-22
Identities = 45/87 (51%), Positives = 59/87 (67%)
Frame = +1
Query: 256 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 435
VPRAV VDLEP +D V++G + LF P+ +I G+ A N +A+GHYT G E+ D VLD
Sbjct: 60 VPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDV 119
Query: 436 IRKLADQCTGLQGFLIFHSFGGGTALG 516
+R+ A+ C LQGF + HS GGGT G
Sbjct: 120 VRREAEACDALQGFQLTHSLGGGTGSG 146
Score = 40.3 bits (90), Expect = 2e-04
Identities = 21/63 (33%), Positives = 28/63 (44%)
Frame = +2
Query: 74 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 253
MRE + + GQ G Q+G A W EHG+ G T + N +F+E GK
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58
Query: 254 PYP 262
P
Sbjct: 59 YVP 61
Score = 38.7 bits (86), Expect = 7e-04
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +3
Query: 510 SGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNS 632
SG +LL+ ++ +Y + F++ PAP+ S VVEPYN+
Sbjct: 145 SGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVEPYNA 185
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 73.3 bits (172), Expect = 3e-14
Identities = 38/99 (38%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Frame = +1
Query: 226 FLQRDRSWQAVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYT 399
F Q D + + +PRA+ +DLEP VV+ + + TY L++PE ++ K A NN+A G Y+
Sbjct: 52 FYQSDDT-RYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YS 109
Query: 400 IGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTALG 516
+ I + ++D I + AD L+GF + HS GGT G
Sbjct: 110 HAERIFEDIMDMIDREADGSDSLEGFSLLHSIAGGTGSG 148
Score = 48.8 bits (111), Expect = 6e-07
Identities = 24/55 (43%), Positives = 33/55 (60%)
Frame = +2
Query: 77 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSET 241
RE I++ GQ G QIG+ W+ CLEHGI PDG + + T G D + FF ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQS 55
Score = 38.7 bits (86), Expect = 7e-04
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = +3
Query: 510 SGFTSLLMERLSVDYGKKSKLEFAIYPAPQ-VSTAVVEPYNSI 635
SG S L+ERL+ Y KK ++++P Q VS VV+PYNS+
Sbjct: 147 SGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSL 189
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 28.7 bits (61), Expect = 0.74
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -2
Query: 309 ADLINNSRFKIDEDS--TGYGLPAPVSLKKVLKESSP 205
AD+IN SR+ ID S T + P+SL KE P
Sbjct: 455 ADIINGSRYNIDRVSPNTAFSTNIPLSLPFANKEPQP 491
>SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dlp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 26.2 bits (55), Expect = 4.0
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -2
Query: 318 CASADLINNSRFKIDEDSTGYGLPAPVSLKKVLKESSPPPMVL 190
C A ++NNS I++ YG +SL+ K SP VL
Sbjct: 213 CLCASILNNSSQYINDACFNYGKFLGLSLQLAHKPVSPDAQVL 255
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +1
Query: 172 WPDAHRQDHRGWRRFFQHFLQR 237
W A R D R R FQHFLQR
Sbjct: 590 WLAACRSDPRCRRLDFQHFLQR 611
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 6.9
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +3
Query: 153 STASSLMARCPQTRPSGVETILSTLSSARPELAS 254
ST SSL + ++PS T ST SSA P S
Sbjct: 173 STFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTS 206
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = -2
Query: 561 SCRSQRRDAPSIRK*TQSGTSTEGVEDQESLQTGTLVSELADSVQN 424
S + SIR ++S +S+ G + Q S+Q+GT ++D ++
Sbjct: 98 SSQKSSNSRKSIRSQSRSRSSSVGSDSQASIQSGTNSEVVSDDEED 143
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 6.9
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 63 LKSKCVSASLYTLAKPESRSVMPAGSFTAWSTASSLMARCP 185
L+S +L+ P SR++ P S + STASSL P
Sbjct: 170 LRSSMPLVMANSLSPPSSRALKPIHSLSNPSTASSLEPSSP 210
>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 399
Score = 25.4 bits (53), Expect = 6.9
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = -2
Query: 342 FWMKQLSVCASADLINNSRF--KIDEDSTGYGLPAPVSLKKVLKESSPPPMVLSVGIW 175
F + + S +++N+ + KID GY S K + E + P + G+W
Sbjct: 205 FMAPYIELYGSTYIVSNTNYITKIDYSGRGYFRGTKNSFKATIFEKNEDPDYIVEGVW 262
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 127 ITDLDSGLANVYRDALTHFDLSF 59
+T +D GLA YRD TH + +
Sbjct: 146 VTMIDFGLAKKYRDFKTHVHIPY 168
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,740,296
Number of Sequences: 5004
Number of extensions: 59251
Number of successful extensions: 188
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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