Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0598
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    31   0.17 
SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.6  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    26   4.8  
SPCP1E11.07c |cwf18||complexed with Cdc5 protein Cwf18 |Schizosa...    26   6.3  
SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc...    25   8.3  

>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 21/81 (25%), Positives = 36/81 (44%)
 Frame = +3

Query: 273 IIILDNGRNVANADEKDKKSFYDMARECAARIIETKILSQAKNSYVGVILLGSKNTKNSL 452
           + +LD G+++         S  +         +  K L+  K   VG++     +TKN L
Sbjct: 8   VFVLDLGKDMGTCHHGRSHSDLEWTLSYFHDELSHKFLANRKTDVVGIVGYKCDDTKNDL 67

Query: 453 AEQAPGEFKHIELLSALQTLL 515
           AEQ    + +I +L  +QT L
Sbjct: 68  AEQE--AYWNISVLYPIQTAL 86


>SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 18/74 (24%), Positives = 33/74 (44%)
 Frame = -2

Query: 228 LEYTTVKLSSSLIKIKFTDQERAKKLFLIKF*MMLDEQFIFFLGFSYKLSLTELKHEQRT 49
           L Y T ++S S + I+ +     K+   +   + L   F FF  F   LS   L  +++ 
Sbjct: 19  LHYATYRVSPSSLHIRLSSWRSRKQTGCLIKGIPLFLFFFFFESFLLPLSFAHLIKQRKL 78

Query: 48  VK*TCLDSKQVNIC 7
           +    +D K  ++C
Sbjct: 79  IFNKAIDFKLNSLC 92


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +3

Query: 276 IILDNGRNVANADEKDKKSFYDMARECAARIIETKILSQAKNSY 407
           ++LD G N+ N + K  K+ + ++ +    I  T I+++  + Y
Sbjct: 653 VVLDEGHNIRNRESKTAKACHSISSQNRWVITGTPIVNKLDDLY 696


>SPCP1E11.07c |cwf18||complexed with Cdc5 protein Cwf18
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 142

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +2

Query: 419 SARIEEH-EEQLS*TSSWRVQTYRIV-IRPANPTWQMIRELPE 541
           S  IEE  + ++   SS  V+   +V +RP  PTW + R+L E
Sbjct: 69  SKEIEEKTKRKIEEQSSVPVEELDLVTLRPKKPTWDLERDLKE 111


>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 50  VRCSCFNSVKLSL*LNPKKNINCSSNIIQNL 142
           VRC C N  KL +  + KK+    S  +QNL
Sbjct: 16  VRCLCDNLPKLEINNDKKKSFEEVSKCLQNL 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,729,888
Number of Sequences: 5004
Number of extensions: 51935
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)