Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0598
         (727 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0501 + 4345522-4345720,4346598-4347167,4347294-4347366,435...    32   0.40 
06_01_0169 - 1346281-1349188,1350069-1350184                           32   0.53 
03_06_0742 + 35900505-35900519,35901230-35901281,35901647-359017...    31   1.2  
08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367,443...    29   2.8  

>08_01_0501 +
           4345522-4345720,4346598-4347167,4347294-4347366,
           4351133-4353092,4353465-4353840,4353932-4354326,
           4354597-4354765,4355444-4355518,4357699-4357826,
           4357988-4358213,4358290-4358417,4358505-4358768
          Length = 1520

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -2

Query: 150 FLIKF*MMLDEQFIFFLGFSYKLSLTELKHE 58
           FL+      DEQ  FF GFSYKL   + +HE
Sbjct: 142 FLVLVDQKQDEQSTFFKGFSYKLKKMKARHE 172


>06_01_0169 - 1346281-1349188,1350069-1350184
          Length = 1007

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 17/41 (41%), Positives = 26/41 (63%)
 Frame = +3

Query: 231  ISLLQNASKIDQGLIIILDNGRNVANADEKDKKSFYDMARE 353
            + LLQ+ SKID GL ++L      +N +E+ K+S +D A E
Sbjct: 960  LRLLQDRSKIDLGLPVVLTKDEG-SNVEEEAKESVHDDAGE 999


>03_06_0742 +
           35900505-35900519,35901230-35901281,35901647-35901772,
           35902303-35902613,35902745-35902988,35903726-35903976,
           35904071-35904277,35904546-35904713,35904798-35905127,
           35905266-35905400
          Length = 612

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +3

Query: 396 KNSYVGVILLGSKNTKNSLAEQAPGEFKHI 485
           ++  +GV+L G+K T N LA++  G +KH+
Sbjct: 10  RSDEIGVVLFGTKETSNELAKEL-GGYKHV 38


>08_01_0509 +
           4433837-4434437,4434564-4434636,4435408-4437367,
           4437721-4437990,4438168-4438605,4438772-4439043,
           4439126-4439274,4439339-4439470,4439554-4439880,
           4439963-4440357,4440551-4440861,4441304-4441394,
           4441806-4441847
          Length = 1686

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = -2

Query: 150 FLIKF*MMLDEQFIFFLGFSYKLSLTELKHE 58
           FL+      DEQ  FF GFSYKL   +  HE
Sbjct: 86  FLVLVDHKQDEQSTFFKGFSYKLKKMKACHE 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,281,845
Number of Sequences: 37544
Number of extensions: 291356
Number of successful extensions: 604
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)