BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0598 (727 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_25939| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3 SB_3423| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9 SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27) 29 5.1 >SB_25939| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 801 Score = 30.7 bits (66), Expect = 1.3 Identities = 19/74 (25%), Positives = 33/74 (44%) Frame = +2 Query: 32 KHVYLTVRCSCFNSVKLSL*LNPKKNINCSSNIIQNLIKKSFFALS*SVNLILISELESF 211 K V LT+ C C V +++ + PK + + +KSF LI+ S+ F Sbjct: 380 KFVVLTLYCFCILLVSIAVAI-PKTLSELARRLCGRKDEKSFLGFKKPEELIVTSDKRGF 438 Query: 212 TVVYSSYIATTKCL 253 ++Y + + CL Sbjct: 439 QLMYENMVFHLNCL 452 >SB_3423| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 562 Score = 29.5 bits (63), Expect = 2.9 Identities = 12/20 (60%), Positives = 15/20 (75%) Frame = +1 Query: 466 LESSNI*NCYPPCKPYLAND 525 LES ++ NCY PC+ LAND Sbjct: 503 LESLSLYNCYGPCRLSLAND 522 >SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27) Length = 601 Score = 28.7 bits (61), Expect = 5.1 Identities = 17/46 (36%), Positives = 25/46 (54%) Frame = +3 Query: 369 IETKILSQAKNSYVGVILLGSKNTKNSLAEQAPGEFKHIELLSALQ 506 IET+I K + V + +KNT +L E G +KHI+ + LQ Sbjct: 105 IETEICILLKTTNVFAAVT-TKNTMETLGETLEGTWKHIDRIITLQ 149 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,549,293 Number of Sequences: 59808 Number of extensions: 359733 Number of successful extensions: 734 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 708 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 734 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1937927537 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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