Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0598
         (727 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59270.1 68416.m06607 syntaxin-related family protein contain...    28   7.2  
At2g16010.1 68415.m01835 hypothetical protein                          27   9.6  
At1g66150.1 68414.m07508 leucine-rich repeat protein kinase, put...    27   9.6  
At1g32540.2 68414.m04015 zinc finger protein, putative similar t...    27   9.6  
At1g32540.1 68414.m04016 zinc finger protein, putative similar t...    27   9.6  

>At3g59270.1 68416.m06607 syntaxin-related family protein contains a
           novel domain similar to F-box that is shared among other
           proteins in Arabidopsis; similar to proteins At1g56610,
           At3g54160, At1g47920 (syntaxin SYP81), At5g41830,
           At3g44180,  At1g48390, At3g59270  [Arabidopsis thaliana]
          Length = 335

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -3

Query: 323 VFFIGICNVSSIIQNY 276
           VFFIGICNV S+  +Y
Sbjct: 160 VFFIGICNVRSLYLSY 175


>At2g16010.1 68415.m01835 hypothetical protein 
          Length = 100

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -3

Query: 389 TENFGFNNASGTFTRHIIKAFFVFFIGICNVSSIIQNYYQALIYFGGIL 243
           TENFG   A    T H  K  F+    +  +  +  +YY +L  F  +L
Sbjct: 9   TENFGLTYAKFKATNHRYKMGFMAKTRVVRMEPLSDSYYLSLTSFIDVL 57


>At1g66150.1 68414.m07508 leucine-rich repeat protein kinase,
           putative (TMK1) identical to protein kinase TMK1
           gi|166888|gb|AAA32876, SP|P43298 Putative receptor
           protein kinase TMK1 precursor (EC 2.7.1.-) {Arabidopsis
           thaliana}
          Length = 942

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 496 DNNSICLNSPGACSAKL 446
           D+NS CL+SPG C  ++
Sbjct: 309 DSNSFCLSSPGECDPRV 325


>At1g32540.2 68414.m04015 zinc finger protein, putative similar to
           zinc-finger protein Lsd1 [Arabidopsis thaliana]
           gi|1872521|gb|AAC49660
          Length = 154

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 47  TVRCSCFNSVKLSL*LNPKKNINCSS 124
           +V+CSC ++V L+L  N   ++NC +
Sbjct: 91  SVQCSCCHTVNLALEANQVAHVNCGN 116


>At1g32540.1 68414.m04016 zinc finger protein, putative similar to
           zinc-finger protein Lsd1 [Arabidopsis thaliana]
           gi|1872521|gb|AAC49660
          Length = 187

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 47  TVRCSCFNSVKLSL*LNPKKNINCSS 124
           +V+CSC ++V L+L  N   ++NC +
Sbjct: 124 SVQCSCCHTVNLALEANQVAHVNCGN 149


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,806,084
Number of Sequences: 28952
Number of extensions: 257052
Number of successful extensions: 543
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)