Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0597
(685 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.83
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 27 1.9
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 2.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.3
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 26 4.4
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo... 26 4.4
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 26 5.8
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 25 7.7
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 25 7.7
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 0.83
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = +2
Query: 344 PACRTPTRPTASAVD---ETPRSAVPTAPASCCPTASFVSLGAARPSVSVYLRCDTSLAR 514
P + P P S+ TPRS+VP+ ++ P+ + S+ +A P+ + R + R
Sbjct: 1232 PTAKAPPVPAPSSEAPSVSTPRSSVPSPHSNASPSPTSSSMASAAPARTSVSRSKSKAER 1291
Query: 515 -IPSTSRRQ 538
STS R+
Sbjct: 1292 HETSTSSRK 1300
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -1
Query: 625 LRSRVLAANASKLGVSTPNGSR-PRTPTGYLTPAS 524
L S A+ S +G++T +G + PRTP G TP S
Sbjct: 124 LESSEPASTNSNVGMTTRSGRQSPRTPIGSTTPKS 158
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.1 bits (57), Expect = 2.5
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Frame = +2
Query: 359 PTRPTASAVDETPRSAVPTAPASCCPTASFVSLGAARPSVSVYLRCDTSLARIPSTSRRQ 538
P + A+ V P +A A A PT S S A PSV+ L +S S +R Q
Sbjct: 1011 PPKQPANRVVPLPPTASQRASAYEPPTVSVPSPSALSPSVTPQLPPVSSRLPPVSATRPQ 1070
Query: 539 ------VTGGRPRTGAVRRANPKLACIGGKHARSKSSYFRDLFPHGN 661
V+ P + AV R P +A G+ + + S+ +P G+
Sbjct: 1071 IPQPPPVSTALPSSSAVSR--PPIATSAGRSSTAASTSAPLTYPAGD 1115
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 359 PTRPTASAVDETPRSAVPTAPASCCPTASFVSLGAARPSVSV 484
P PT+++ +T S +PT SC + S + G++ S +
Sbjct: 206 PIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPI 247
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 359 PTRPTASAVDETPRSAVPTAPASCCPTASFVSLGAARPSVS 481
P PT+++ +T S +PT SC + S G + V+
Sbjct: 262 PIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVT 302
>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 26.2 bits (55), Expect = 4.4
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = -2
Query: 507 RDVSHLKYTDTDGRAAPSETKDAVGQHDAGAVGTADRGVSSTAEAVGRVGVRH 349
R +K D DGR S+ K A +HD +G +S+ E VG RH
Sbjct: 45 RQEKEMKRHDDDGRQYQSDRKFAKSKHDDIILGPPKLSFASSNENGRSVG-RH 96
>SPAC24C9.12c |||glycine hydroxymethyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 683 KCDNAVPHSHEGKGHGNTKTSIARACRQCKQ 591
K + +V H+G H +T T++A A +QC++
Sbjct: 276 KINFSVFPGHQGGPHNHTITALAVALKQCQE 306
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/19 (68%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Frame = -3
Query: 464 PPLAR-QRTPSGSTTPVRS 411
PP A QRTPSGS TP+ S
Sbjct: 348 PPRAPLQRTPSGSLTPLSS 366
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 25.4 bits (53), Expect = 7.7
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = -1
Query: 676 TTPSRIPMREKVTEIRRLRSRVLAANASKLGVSTPNGSR--PRTPTGYLTPAS 524
T PS+ + V + R A + S VS+PN P TP ++ P +
Sbjct: 142 TVPSKFSLNPSVATSTNISPRRHAKSHSVASVSSPNSHNAVPFTPHAFVPPVN 194
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 356 TPTRPT-ASAVDETPRSAVPTAPASCCPTASFVSLGAARPSVSVYL 490
TP + T +D + V T+P SC +++F A + S+ L
Sbjct: 831 TPEKETKVDKIDNVSKKDVETSPGSCETSSAFAKTYAEKEVTSINL 876
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,440,845
Number of Sequences: 5004
Number of extensions: 44970
Number of successful extensions: 173
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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