Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0597
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0549 + 18696903-18698330 33 0.16
09_06_0081 + 20745627-20748144,20748211-20748308 32 0.37
03_02_0784 - 11154395-11154888,11155284-11155360,11155447-111554... 32 0.37
02_05_0584 - 30135768-30135790,30136104-30136866 31 0.64
07_01_0511 + 3806475-3806876,3807914-3808039,3808120-3808193,380... 31 1.1
11_04_0137 + 13909204-13909315,13910002-13910999,13911058-139112... 29 2.6
05_01_0407 + 3208818-3210218 29 2.6
04_04_0622 + 26663471-26663620,26663822-26664384,26664483-266646... 29 3.4
05_05_0392 + 24629528-24630442 29 4.5
12_01_0298 - 2250517-2251235,2251331-2251577,2251615-2252951,225... 28 6.0
07_03_0137 + 14101849-14102511 28 6.0
03_05_0736 - 27254502-27255497 28 6.0
08_02_1360 + 26391141-26391287,26392256-26392627,26393372-26393860 28 7.9
06_03_1004 - 26832638-26833183,26833373-26833569,26833636-268338... 28 7.9
03_06_0647 - 35267177-35267323,35267461-35267547,35268319-352684... 28 7.9
02_05_0686 - 30900748-30902167,30903442-30904742 28 7.9
>10_08_0549 + 18696903-18698330
Length = 475
Score = 33.5 bits (73), Expect = 0.16
Identities = 20/47 (42%), Positives = 25/47 (53%)
Frame = -2
Query: 420 GAVGTADRGVSSTAEAVGRVGVRHAGDARRPPRPRHAQNHRETRTIP 280
GAV RG ++ A +V V R +AR PPRP A HRE +P
Sbjct: 180 GAVAEMARGGAAAAPSVAPVWGREMLEARSPPRPAFA--HREYDEVP 224
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 32.3 bits (70), Expect = 0.37
Identities = 23/56 (41%), Positives = 29/56 (51%)
Frame = +2
Query: 347 ACRTPTRPTASAVDETPRSAVPTAPASCCPTASFVSLGAARPSVSVYLRCDTSLAR 514
A R PT P A+A TPR+ P A A+ P A +L + PS V +R T AR
Sbjct: 703 ARRAPTSPPAAA---TPRAPTPPAAAAAAPAAP-PALPSGLPSWPVLVRPPTGPAR 754
>03_02_0784 -
11154395-11154888,11155284-11155360,11155447-11155497,
11155599-11155672,11156127-11156215,11156533-11156618,
11157570-11157669,11158540-11158622,11158776-11159194
Length = 490
Score = 32.3 bits (70), Expect = 0.37
Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 2/111 (1%)
Frame = +2
Query: 344 PACRTPTRPTASAV-DETPRSAVPTAPASCCPTASFVSLGAARP-SVSVYLRCDTSLARI 517
P P P AV D P +P P+SC + +GA P ++++ D S+
Sbjct: 39 PVAAAPQHPLPVAVADPAPLLLLP-PPSSCTCNGASSGMGAVAPRTLALGATTDGSVMTP 97
Query: 518 PSTSRRQVTGGRPRTGAVRRANPKLACIGGKHARSKSSYFRDLFPHGNAGR 670
S GG AVR +P L + G R +S +R + H GR
Sbjct: 98 TSWGSDGGGGGSSSARAVRSPSPVLPLVQGTGQR--TSCYRGVTRHRWTGR 146
>02_05_0584 - 30135768-30135790,30136104-30136866
Length = 261
Score = 31.5 bits (68), Expect = 0.64
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +2
Query: 350 CRTPTRPTASAVDETPRSAVPTAPASCCPTASFVSLGAARP 472
C TP D +AVPT PA+CC F SL + P
Sbjct: 172 CMTPLMSVMPCADYLTNTAVPTPPATCCD--GFRSLVSTAP 210
>07_01_0511 +
3806475-3806876,3807914-3808039,3808120-3808193,
3808278-3808347,3808431-3808486,3808578-3808649,
3808678-3808811,3808967-3809030,3809111-3809240,
3809326-3809541,3809629-3809750,3810527-3810701,
3810788-3810878,3811040-3811197,3811330-3811518,
3813257-3813340,3813362-3813536,3815300-3815955,
3816226-3816648,3816752-3816790
Length = 1151
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 396 GVSSTAEAVGRVGVRHAGDARRPPRPRHAQNHRETRTIP 280
G + ++ A G G H D+ PP +++HR T + P
Sbjct: 800 GAAGSSTATGAAGSNHTADSTVPPSLLSSEHHRSTESDP 838
>11_04_0137 +
13909204-13909315,13910002-13910999,13911058-13911267,
13911522-13912056,13912154-13912461
Length = 720
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = -2
Query: 363 VGVRHAGDARRPPRPRHAQNHRETRTIPIVNERKQT*HTRLR 238
+G+R AG RPPRPR + E I + R+++ H RLR
Sbjct: 1 MGIRQAGLKPRPPRPRCLFDLFEDH---IASRRRESPHRRLR 39
>05_01_0407 + 3208818-3210218
Length = 466
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/48 (43%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = -2
Query: 417 AVGTADRGVSSTAEAVGRVGVRHAGDARRPPRPRH--AQNHRETRTIP 280
AVG RGV A V V R ARRPP PR A H E +P
Sbjct: 180 AVGEFARGVPG-APTVKPVWARELLSARRPPLPRDVAAPRHPEYEAVP 226
>04_04_0622 +
26663471-26663620,26663822-26664384,26664483-26664675,
26664801-26664865,26665182-26665398,26665485-26665823
Length = 508
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/70 (28%), Positives = 28/70 (40%)
Frame = +2
Query: 359 PTRPTASAVDETPRSAVPTAPASCCPTASFVSLGAARPSVSVYLRCDTSLARIPSTSRRQ 538
PT P + PR P APA A+ S ++ P+ ++ D R +R
Sbjct: 74 PTLPRLGNLAPPPRQPPPPAPAPAPDAAAAASPSSSCPAYFRWIHEDLRPWRDAGITREA 133
Query: 539 VTGGRPRTGA 568
V G R GA
Sbjct: 134 VDGAARRYGA 143
>05_05_0392 + 24629528-24630442
Length = 304
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = -2
Query: 423 AGAVGTA--DRGVSSTAEAVGRVGVRHAGDARRPPRPRHAQNHRETRTIP 280
+G +G A DRG ++ GR G A + PP PR R TR P
Sbjct: 144 SGELGRARRDRGPAAAVHGAGRPGGGRASPS-PPPPPRREPGERPTRRSP 192
>12_01_0298 -
2250517-2251235,2251331-2251577,2251615-2252951,
2256029-2256188
Length = 820
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +2
Query: 344 PACRTPTR---PTASAVDETPRSAVPTAPASCCPTASFVSLGAARP 472
PAC R PT+ +V +P+S VP+ PA+ + + S A P
Sbjct: 307 PACSFMPREPAPTSPSVPSSPQSVVPSNPAASSSSVASSSPALATP 352
>07_03_0137 + 14101849-14102511
Length = 220
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 458 GAARPSVSVYLRCDTSLARIPSTSRRQVTGGRPRTG 565
G ARP ++ LRC T L R TSR GG+ G
Sbjct: 58 GEARPRATLPLRCRTWLWRSKPTSRGGGRGGQRDAG 93
>03_05_0736 - 27254502-27255497
Length = 331
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -2
Query: 471 GRAAPSETKDAVGQHDAGAVGTADRGVSSTAEAVGRVGVRHAGDAR 334
GRAA +E +A+ +DA A G + + A A+ R GDAR
Sbjct: 185 GRAAAAEATEAIASYDADAAGEEE----AAAAALRRGVAAPVGDAR 226
>08_02_1360 + 26391141-26391287,26392256-26392627,26393372-26393860
Length = 335
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/71 (25%), Positives = 29/71 (40%)
Frame = +2
Query: 434 PTASFVSLGAARPSVSVYLRCDTSLARIPSTSRRQVTGGRPRTGAVRRANPKLACIGGKH 613
P F+ + AAR +V Y R + R P + Q R + RRA+ ++ + H
Sbjct: 211 PNGGFLYVRAARRTVDFYRRWRDARRRFPPGTNEQHVLERAQAELSRRADVRMQFLDTAH 270
Query: 614 ARSKSSYFRDL 646
RD+
Sbjct: 271 CGGFCQLSRDM 281
>06_03_1004 -
26832638-26833183,26833373-26833569,26833636-26833861,
26833943-26834072,26835884-26836188
Length = 467
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = -2
Query: 489 KYTDTDGRAAPSETKDAVGQHDAGAVGTADRGVSSTAEAVGRVGVRHAGDARRPPRPR 316
+Y D G AAP ++ A + AG +G A + R G R G R P R R
Sbjct: 20 RYDDRGGTAAPGDSLAAAAEAAAGQLGRATGRMRKL-----RAGERIPGGGRPPARGR 72
>03_06_0647 -
35267177-35267323,35267461-35267547,35268319-35268451,
35268571-35268620,35269131-35269202,35269782-35270004,
35270331-35270604,35270687-35270813,35270942-35271189,
35271682-35271772
Length = 483
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +2
Query: 386 DETPRSAVPTAPASCCPTASFVSLGAARPSVSVYLRCDTSLARIPSTSRRQVTG 547
D P S + P CC + + LG P + + +TSL S SR +TG
Sbjct: 316 DNGPNS-LTMVPCRCCQKTTLLILGVIMPFKLIVISLETSLL-FASLSRYAMTG 367
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 338 ASPACRTPTRPTASAVDETPRSAVPTAPASCCPTAS 445
A R P+ P +AV PRS+ APA AS
Sbjct: 248 AEAYARPPSTPAITAVSSVPRSSPSPAPAPAARPAS 283
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,865,390
Number of Sequences: 37544
Number of extensions: 341952
Number of successful extensions: 1542
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1540
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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