Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0597
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)             38   0.008
SB_43422| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.38 
SB_39767| Best HMM Match : CBAH (HMM E-Value=0.86)                     31   0.66 
SB_45934| Best HMM Match : Gp-FAR-1 (HMM E-Value=2)                    30   1.5  
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)            30   2.0  
SB_46046| Best HMM Match : DUF164 (HMM E-Value=0.38)                   28   6.1  
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_9456| Best HMM Match : OTU (HMM E-Value=3.1e-18)                    28   6.1  
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)                   28   6.1  
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_42612| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_4107| Best HMM Match : M (HMM E-Value=8e-22)                        28   8.1  

>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
          Length = 812

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 25/80 (31%), Positives = 35/80 (43%)
 Frame = +2

Query: 338 ASPACRTPTRPTASAVDETPRSAVPTAPASCCPTASFVSLGAARPSVSVYLRCDTSLARI 517
           A+PA  T  +P  +   ++P S +P+ PA CC    F     A+   +    CDT  A  
Sbjct: 659 AAPAAMTCPQPACAP--QSPMSCMPSCPAYCCKRNHFPRKAMAKKGNTCPAICDTQCA-- 714

Query: 518 PSTSRRQVTGGRPRTGAVRR 577
           P   RR     RP+   V R
Sbjct: 715 PVCPRRCCGPRRPQAAIVHR 734


>SB_43422| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1472

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 21/66 (31%), Positives = 31/66 (46%)
 Frame = +2

Query: 362 TRPTASAVDETPRSAVPTAPASCCPTASFVSLGAARPSVSVYLRCDTSLARIPSTSRRQV 541
           TRP++      P S  PT+ +S  PT +F    A RPS        +S    P+T   ++
Sbjct: 515 TRPSSEKPTTRPFSETPTSTSSETPTKTFNKTPATRPSSETPTTRPSS--ETPTTKPPEI 572

Query: 542 TGGRPR 559
           + GR R
Sbjct: 573 SFGRRR 578


>SB_39767| Best HMM Match : CBAH (HMM E-Value=0.86)
          Length = 1182

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 10/64 (15%)
 Frame = +2

Query: 341 SPACRTPTRPTASAVD----------ETPRSAVPTAPASCCPTASFVSLGAARPSVSVYL 490
           +PA  TPT P   A D          ETP SA+ +APA+  P A+      +RPSV+ YL
Sbjct: 636 TPAPTTPTSPATPASDAPIRTPIPLKETPSSALESAPAA-MPDAT--DTAWSRPSVTYYL 692

Query: 491 RCDT 502
             +T
Sbjct: 693 GSET 696


>SB_45934| Best HMM Match : Gp-FAR-1 (HMM E-Value=2)
          Length = 694

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 10/114 (8%)
 Frame = +2

Query: 341 SPACRTPTRPTASA----------VDETPRSAVPTAPASCCPTASFVSLGAARPSVSVYL 490
           +PA  TPT P   A          + ETP  A+ +APA+  P A+  +   A+  +  + 
Sbjct: 143 TPAPTTPTSPATPASGPPIRTPIPLKETPTPALESAPAA-MPDATDTAWVTAKARLYFFR 201

Query: 491 RCDTSLARIPSTSRRQVTGGRPRTGAVRRANPKLACIGGKHARSKSSYFRDLFP 652
            C  S +R        +  G       RR  P+      +   ++SS FR+  P
Sbjct: 202 TCRPSPSRCLEPPECHIFSGVESFARRRRRLPERQVSSSRPISAQSSAFRNATP 255


>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +2

Query: 341 SPACRTPTRPTASAVDETPRSAVPTAPASCCPTASFVSLGAARPSVSVYLRCDTSLARIP 520
           +P   +PT PT +    TP +  PT P    PT +  +L    P+ +      T  A  P
Sbjct: 55  TPTTPSPTAPTQTT--PTPATPTPTTPTPKTPTPTTSTLTKPTPATTPTPTKPTPTAHTP 112

Query: 521 ST 526
           +T
Sbjct: 113 TT 114



 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 356 TPTRPTASAVDETPRSAVPTAPASCCPT 439
           TPT+PT +    TP    PT P S  PT
Sbjct: 25  TPTKPTPTT--HTPTKPSPTTPTSTAPT 50



 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +2

Query: 341 SPACRTPTRPTASAVDETPRSAVPTAPASCCPTASFVSLGAARPSVSVYL 490
           +P   TPT PT +A   TP    P  P    PT +  +     P+  + L
Sbjct: 106 TPTAHTPTTPTPTA--HTPTKPTPKTPTPTTPTPTAHTPTTPTPTTFILL 153



 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +2

Query: 341 SPACRTPTRPTASAVDET---PRSAVPTAPASCCPT 439
           +P   +PT PT++A  +T   P +  PTAP    PT
Sbjct: 35  TPTKPSPTTPTSTAPTQTTPTPTTPSPTAPTQTTPT 70


>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
          Length = 509

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +2

Query: 344 PACRTPTRPTASA--VDETP-RSAVPTAPASCCPTASFVSLGAARPSVSV 484
           PA  TPT+PT +      TP +S   T PA+  PT   + L  +R + SV
Sbjct: 154 PATTTPTKPTTTTPPATTTPTKSTTTTPPATTTPTTRPLLLLCSRRTYSV 203



 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 344 PACRTPTRPTASAVDETPRSAVPTAPASCCPTAS 445
           PA  TPT+PT +     P +  PT P +  P A+
Sbjct: 70  PATTTPTKPTTTT---PPATTTPTTPTTTTPPAT 100



 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 344 PACRTPTRPTASAVDETPRSAVPTAPASCCPTAS 445
           PA  TPT+PT +     P +  PT P +  P A+
Sbjct: 140 PATTTPTKPTTTT---PPATTTPTKPTTTTPPAT 170



 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 344 PACRTPTRPTASAVDETPRSAVPTAPASCCPTAS 445
           PA  TPT+PT +     P +  PT P +  P A+
Sbjct: 112 PATTTPTKPTTTT---PPGTTTPTKPTTTTPPAT 142


>SB_46046| Best HMM Match : DUF164 (HMM E-Value=0.38)
          Length = 221

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = -1

Query: 646 KVTEIRRLRSRVLAANASKLGVSTPNGSRPRTPTGYLTPASG---RYSSEGCIAPQVYRH 476
           K+TEI+R  S +     S +       +RP+T +G L+ +     R S+E       YRH
Sbjct: 145 KITEIKRPASTLGIVPVSAVTTVRKPVTRPKTTSGTLSVSKSIPPRPSTEPITTSSPYRH 204

Query: 475 *W 470
            W
Sbjct: 205 SW 206


>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2848

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -1

Query: 667  SRIPMREKVTEIRRLRSRVLAANASKLGVSTPNGSRPRTPTGYLTPASG 521
            SRIP+     +      R  A+++S    STP  S P TPT   TP+ G
Sbjct: 988  SRIPVLSSKPQASPTTDRRAASSSSNH--STPVNSAPPTPTKNATPSKG 1034


>SB_9456| Best HMM Match : OTU (HMM E-Value=3.1e-18)
          Length = 1311

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 589  LGVSTPNGSRPRTPTGYLTPASGRYSSE-GCIAPQV 485
            LGV T     P+ P+G +   SG+YS +  C  P+V
Sbjct: 1159 LGVCTEAPGAPQEPSGPIPEGSGKYSRDIDCKLPEV 1194


>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
          Length = 638

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = -1

Query: 679 ATTPSRIPMREKVTEIRRLRSRVLAANASKLGVSTPNGSRPRTP 548
           AT+P + P+  K +    LR   ++++ S   VSTP+ + PRTP
Sbjct: 493 ATSPKQPPLPPKHSNGPPLRQTPMSSSLSATPVSTPD-TTPRTP 535


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = -2

Query: 486 YTDTDGRAAPSETKDAVGQHDAGAVGTADRGVSSTAEAVGRVG 358
           YT     A  + T +A G   AGA GTA  G  +TA   G  G
Sbjct: 296 YTGNSSMATATSTSNAAGNATAGASGTA--GGGATAGGNGTAG 336


>SB_42612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 732

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = -1

Query: 646 KVTEIRRLRSRVLAANASKLGVSTPNGSRPRTPTGYLTPASG---RYSSEGCIAPQVYRH 476
           K+TEI+R  S +     S +       +RP+T +G L+ +     R S+E       YRH
Sbjct: 404 KITEIKRPASTLGIVPVSAVTTVRKPVTRPKTTSGTLSVSKSIPPRPSTEPITTSSPYRH 463

Query: 475 *W 470
            W
Sbjct: 464 SW 465


>SB_4107| Best HMM Match : M (HMM E-Value=8e-22)
          Length = 2039

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -1

Query: 631  RRLRSRVLAANASKLGVSTPNGSRPRTPTGYLTPA-SGRYSSEGCIAPQVYR 479
            RR+  R  + +  K    T  G RP +P   L+P+ SG  S  G I P+  R
Sbjct: 1386 RRMFGRSRSRSPEKSMDDTDAGGRPSSPIRQLSPSRSGDMSMSGEIDPETVR 1437


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,304,054
Number of Sequences: 59808
Number of extensions: 382077
Number of successful extensions: 1373
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1349
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)